Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 652 a.a., DNA gyrase subunit B from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  643 bits (1659), Expect = 0.0
 Identities = 330/560 (58%), Positives = 419/560 (74%), Gaps = 11/560 (1%)

Query: 1   MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
           ++N+Y ++SI+VL+GL+AVRKRP MYIGD     GLHH+V+EVVDNSIDEALAG+C +I 
Sbjct: 9   LANDYSANSIQVLEGLEAVRKRPAMYIGDIGI-KGLHHLVWEVVDNSIDEALAGHCDEIN 67

Query: 61  VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
           VTI+EDNS++VSD+GRGIPT+ H +E  SA EV+MTVLHAGGKFD ++YKVSGGLHGVGV
Sbjct: 68  VTINEDNSITVSDNGRGIPTDFHQKEGRSALEVVMTVLHAGGKFDKDTYKVSGGLHGVGV 127

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETERTGTTVRFWPSAQTFTNIE 180
           S VNALS  + +T++R GKI+ Q Y+ GVPQ P+  +GET+RTGTTV+F P A  FT  E
Sbjct: 128 SCVNALSTDLHVTVHRKGKIYEQHYNIGVPQYPVREIGETDRTGTTVQFKPDASIFTATE 187

Query: 181 FHYDILAKRLRELSFLNSGVSIKLTDERE-----EDKKDHFMYEGGIQAFVTHLNRNKTP 235
           + +D +A RLRELSFLN G+ I L D RE     E   D F+ EGG++ FVT+L+  +  
Sbjct: 188 YKFDTIASRLRELSFLNKGIRINLKDLRELNDQGEPLNDSFLSEGGLKEFVTYLDETREN 247

Query: 236 IHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLN 295
           +  +  H   E+ +G+ VE+A+Q+N  + ENI+ + NNI   +GGTH+AGFR ALTRTL 
Sbjct: 248 LIPEPIHVESEK-NGVPVEIALQYNTSYSENIFSYVNNINTIEGGTHVAGFRRALTRTLK 306

Query: 296 NYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMN 355
            Y +K G   K +   +GDD REGLTAV+SVKV +P+F  QTK KL +SEV  AV++A+ 
Sbjct: 307 AYAEKSGMLDKVKVDIAGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSEVSGAVDTAVG 366

Query: 356 EKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKD 415
           E L  +L ENP EA+ + +K+I AA+AR AARKAREM +RK  L    LPGKLADC + +
Sbjct: 367 EMLNQYLEENPKEARTIVNKVIIAAQARHAARKAREMVQRKNVLSSTSLPGKLADCSDNN 426

Query: 416 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 475
           P   E+Y+VEGDSAGGSAKQGR+RK QAILPL+GKILNVEKA+  ++  S E+  +ITAL
Sbjct: 427 PENCEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKAQEHRIYESDEIKNMITAL 486

Query: 476 GCGIGRDE----YNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIA 531
           G   G  E     N DKLRYH IIIMTDADVDGSHIRTL+LTFF+R M ELIE+GY+YIA
Sbjct: 487 GVSFGTQEDEKALNMDKLRYHKIIIMTDADVDGSHIRTLILTFFFRYMKELIEKGYVYIA 546

Query: 532 QPPLYKVKKGKQEQYIKDEE 551
            PPLY VKKGK+E+Y   E+
Sbjct: 547 LPPLYLVKKGKEERYCWSEQ 566



 Score = 92.8 bits (229), Expect = 5e-23
 Identities = 46/77 (59%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 729 KESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEP 788
           K     + +QRYKGLGEMNP+QLW TTMDP +R + +V IE A  AD LF+ LMGD+V P
Sbjct: 577 KGREESVGVQRYKGLGEMNPEQLWNTTMDPTSRSLKRVDIESAAEADHLFSMLMGDEVAP 636

Query: 789 RRAFIETNALKVANLDV 805
           RR FIE NA K A +DV
Sbjct: 637 RRDFIERNA-KYARVDV 652