Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., DNA topoisomerase IV from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  269 bits (688), Expect = 3e-76
 Identities = 195/572 (34%), Positives = 291/572 (50%), Gaps = 63/572 (11%)

Query: 1   MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNSIDEALAGYC 56
           + +NY   SI+ L+  + +R RPGMYIG   DG+    G++ +V EV+DNSIDE + G+ 
Sbjct: 4   LEHNYTEDSIRSLEPREHIRLRPGMYIGKLGDGSSADDGIYILVKEVIDNSIDEHVMGFG 63

Query: 57  KDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTV--LHAGGKFDDNSYKVSGG 114
           K I V I  D+ V V D GRGIP            +VI  V  ++ GGK+D  +++ S G
Sbjct: 64  KTIEVKI-SDHKVQVRDYGRGIPL----------GKVIDCVSKINTGGKYDSKAFQKSVG 112

Query: 115 LHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETERTGTTVRFWPSAQ 174
           L+GVG   VNALS    +   R GK+ +  +  GV      V    +R GT   F P   
Sbjct: 113 LNGVGTKAVNALSSHFRIQSVRDGKMKAAEFEKGVLTEDFEVQDSPQRNGTLTVFTPDDT 172

Query: 175 TFTNIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKT 234
            F N +F+ D L  ++    +LN+G++I    ++       F  E G+      L RNK 
Sbjct: 173 IFKNYQFNPDYLENQIWNYVYLNAGLTINFNGKK-------FYSENGL----LDLLRNKA 221

Query: 235 PIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTL 294
              E+   +      G  +E+A+   D + E  Y F N      GGTHLA FR A+ +T+
Sbjct: 222 D--EESLRYPIIHLKGEDIELALTHGDNYGEEYYSFVNGQYTTMGGTHLAAFREAVVKTV 279

Query: 295 NNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE-------VK 347
            ++     + K   AA    D R  +   VS++V +P F SQTK KL S E       V+
Sbjct: 280 RDF-----YKKDYDAA----DIRGSIIGAVSLRVQEPVFESQTKTKLGSIEMGPDGPAVR 330

Query: 348 SAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPG- 406
           + V   + E L ++L +NP  A+ +  +I  + R R+     +++  ++     A L   
Sbjct: 331 AYVNDFVREHLDNYLHKNPETAEALRKRIEQSERERKDMAGVKKLANQRAKK--ANLHNR 388

Query: 407 KLADCQ--------EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 458
           KL DC+        EK   LS L+I EGDSA GS  + RN  ++A+  L+GK LN    +
Sbjct: 389 KLRDCRLHFNEDKGEKS-LLSTLFITEGDSASGSITKSRNVDSEAVFSLRGKPLNCFGLK 447

Query: 459 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQ 518
              +  ++E   L  AL       E   + LRY+ ++I TDADVDG HIR LLLTFF + 
Sbjct: 448 KKVVYENEEFNLLQHALNI-----EEGLEGLRYNRVVIATDADVDGMHIRLLLLTFFLQF 502

Query: 519 MPELIERGYIYIAQPPLYKVKKGKQEQYIKDE 550
            P+L+  G++YI + PL++V+  K+  Y  +E
Sbjct: 503 FPDLVRNGHVYILETPLFRVRNKKETIYCYNE 534



 Score = 30.0 bits (66), Expect = 4e-04
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 737 IQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIETN 796
           I R+KGLGE++PD+  +   D    ++  V ++      ++ +  MG     R+ FI  N
Sbjct: 550 ITRFKGLGEISPDEFGKFIGD--NIKLKPVILQKDTTIQKMLSYYMGKNTPDRQQFIIEN 607