Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., DNA topoisomerase IV subunit B from Magnetospirillum magneticum AMB-1

 Score =  432 bits (1110), Expect = e-125
 Identities = 249/563 (44%), Positives = 350/563 (62%), Gaps = 21/563 (3%)

Query: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61
           +  Y +  I+VL+GL+ VR+RPGMYIG TDD   LHH+V EV+DN++DEA+AG+   I +
Sbjct: 15  ATEYSAKDIEVLEGLEPVRRRPGMYIGGTDD-RALHHLVAEVLDNAMDEAVAGHAGWIEL 73

Query: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
            +  D + +V D+GRGIP + HP+    SA EVI+T LH+GGKF  ++YKVSGGLHGVGV
Sbjct: 74  ELAVDGTCTVRDNGRGIPVDPHPKYPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGV 133

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVRFWPSAQTF-TN 178
           SVVNALS+ + + + R   + SQ +  G+P  PL  VG  + R GTTV F P AQ F   
Sbjct: 134 SVVNALSDALTVEVARDRVLWSQRFSRGLPLGPLEKVGPVQNRRGTTVIFHPDAQIFGER 193

Query: 179 IEFHYDILAKRLRELSFLNSGVSIK-------LTDEREEDKKDHFMYEGGIQAFVTHLNR 231
            +     L +  R  ++L  GV I+       + D  E   +D   + GG+  F+  + +
Sbjct: 194 AQLRPGPLYRMARSKAYLFRGVQIRWKCDPLLIKDGDEIPAEDTLHFPGGLTDFLKAVLK 253

Query: 232 NKTPIHEKVFHFNQEREDGIS-VEVAMQWNDGFQE---NIYCFTNNIPQRDGGTHLAGFR 287
            +  + + +F       D +  VE A+ W D  +E   N YC  N +P  +GGTH AGFR
Sbjct: 254 ERPLVTKDMFQGTAPLADDMGQVEWALAWPDDDEEGFVNTYC--NTVPTPEGGTHEAGFR 311

Query: 288 GALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 347
             LT+ L +Y +  G  K  Q   + +D   G   +VS+ + DP+F  QTK+KL S E  
Sbjct: 312 NLLTKGLRSYGEMAGNKKAGQI--TAEDVMVGACVMVSLFIRDPQFQGQTKEKLASPEAT 369

Query: 348 SAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGK 407
             VE+A+ +    +L+ + + A  + +++I+ A  R   R+A+EM R+     L  LPGK
Sbjct: 370 RLVENAVKDHFDHWLSGDKASAGALLTRLIEKAEDRARRRQAKEMNRKTPTKRLR-LPGK 428

Query: 408 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 467
           LADC       +EL++VEGDSAGGSAK GRNR+ QAILPL+GKILNV  A  DK+  +QE
Sbjct: 429 LADCSRSVNVGTELFLVEGDSAGGSAKSGRNRETQAILPLRGKILNVASASTDKLRQNQE 488

Query: 468 VATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGY 527
           +  L+ ALGCG  RD Y+ +KLRY  IIIMTDADVDG+HI +LL+TFFY++MPELI  G+
Sbjct: 489 LKDLMEALGCG-ARDNYDDEKLRYEKIIIMTDADVDGAHIASLLMTFFYQEMPELIRNGH 547

Query: 528 IYIAQPPLYKVKKGKQEQYIKDE 550
           +Y+A PPLY++  G+   Y +D+
Sbjct: 548 LYLALPPLYRLAHGQIVAYGRDD 570



 Score = 60.8 bits (146), Expect = 2e-13
 Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 9/84 (10%)

Query: 731 SRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTI---------EDAVGADELFTTL 781
           +++ + I R+KGLGEM P QL ETTMDP  R +++VTI         E+A     L  +L
Sbjct: 583 NKKNVEISRFKGLGEMPPAQLKETTMDPSRRTLLRVTIPSGRTEEDHEEAKDVARLVESL 642

Query: 782 MGDQVEPRRAFIETNALKVANLDV 805
           MG + E R AFI+  A    +LDV
Sbjct: 643 MGRKPELRFAFIQERARFATDLDV 666