Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 816 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Magnetospirillum magneticum AMB-1

 Score =  848 bits (2190), Expect = 0.0
 Identities = 441/808 (54%), Positives = 583/808 (72%), Gaps = 13/808 (1%)

Query: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61
           +  Y + SI+VL+GL+AVRKRPGMYIGDTDDG+GLH M++E VDN++DE + G+     V
Sbjct: 18  AEEYGAGSIQVLRGLEAVRKRPGMYIGDTDDGSGLHRMIYEAVDNAVDEIMNGFGDRCDV 77

Query: 62  TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121
            ++ D SV V+D+GRGIP ++HPEE +SAAEV +T LHAGGKF+ NS ++S GLHGVG+S
Sbjct: 78  VLNADGSVLVTDNGRGIPVDIHPEEGISAAEVALTKLHAGGKFEQNSNRISSGLHGVGIS 137

Query: 122 VVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVRFWPSAQTFTNIE 180
           VVNALSE + L I+R GK H   + HG P+APLAVVGE  +RTGT V F PS  TF++ +
Sbjct: 138 VVNALSEWLELRIWRHGKEHFMRFRHGEPEAPLAVVGECGDRTGTQVVFLPSKGTFSHTD 197

Query: 181 FHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFM-YEGGIQAFVTHLNRNKTPIHEK 239
           F +D +  RLREL+FLNS  ++ + DER  + ++  + YEGG+QAFV  L+R+K  +H  
Sbjct: 198 FDFDTVEHRLRELAFLNSRATLLIKDERHAETREALLHYEGGVQAFVQWLDRSKEALHAP 257

Query: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299
           +    ++  D + +E++M+W D + E   CFTNN+PQ+DGGTHLAGFR ALTRT+N Y +
Sbjct: 258 ILIAAEK--DVVRLELSMEWTDSYHETCLCFTNNVPQKDGGTHLAGFRAALTRTINAYAN 315

Query: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359
             G +KK +   +GDD REGLT V+SVK+PDPKFSSQ K+KLVSSEV+  VE+ + EKLA
Sbjct: 316 DSGIAKKEKVNLAGDDMREGLTCVLSVKMPDPKFSSQAKEKLVSSEVRPLVENLVGEKLA 375

Query: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419
           ++  E+P+EA+ V +K+++AA AREAARKARE+TRRKG LD+A LPGKLADCQE+DPALS
Sbjct: 376 EWFEEHPAEARKVVTKVVEAAAAREAARKARELTRRKGVLDIATLPGKLADCQERDPALS 435

Query: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479
           EL+IVEGDSAGGSAKQGRNR NQAILPLKGKILNVE+ARFDKMLSS E+ TLI A+G GI
Sbjct: 436 ELFIVEGDSAGGSAKQGRNRANQAILPLKGKILNVERARFDKMLSSAEIGTLIAAMGTGI 495

Query: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539
           GR+++N DK RYH IIIMTDADVDGSHIRTLLLTFFYRQMP LIERGY+YIAQPPLY+ K
Sbjct: 496 GREDFNVDKARYHKIIIMTDADVDGSHIRTLLLTFFYRQMPALIERGYLYIAQPPLYRAK 555

Query: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599
           +G+ E Y+KD+ A+ +Y +   +  A L + AD   LA   L  LV+Q  +   L+  +S
Sbjct: 556 RGQSEVYLKDDRALEEYLIDGGLADAVLRM-ADGTQLASIDLRALVEQARSVRNLLTPLS 614

Query: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQ--YSVLVEHNAE 657
           RR P  ++ +      +++ L  D     A  Q L ++L+A E    +      VE +  
Sbjct: 615 RRVPLKLVEQAAIADALDSSLLTDAVRGPAIVQGLAQRLDALETHLERGWTGTWVEGDG- 673

Query: 658 LNVYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPI 717
              Y     +R  GVT  + L + +I S E  +L +L+  L    +  A +   ER   +
Sbjct: 674 ---YTFSRTLR--GVTETHALDSAVIRSAEARRLHELAPRLRETFDRPAALMVRERETVL 728

Query: 718 SSFAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADEL 777
           S   A +  ++++ RRG++IQRYKGLGEMNP+QLWETT+DP+ R ++QV +  A  A+++
Sbjct: 729 SGPVALVTAVMEQGRRGIAIQRYKGLGEMNPEQLWETTLDPQARSLLQVKVAQADDAEQV 788

Query: 778 FTTLMGDQVEPRRAFIETNALKVANLDV 805
           F+TLMGD VEPRR FI+TNALKV+NLDV
Sbjct: 789 FSTLMGDVVEPRRDFIQTNALKVSNLDV 816