Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 635 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Fusobacterium nucleatum SB010

 Score =  539 bits (1388), Expect = e-157
 Identities = 276/546 (50%), Positives = 380/546 (69%), Gaps = 6/546 (1%)

Query: 4   NYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVTI 63
           +Y++ +I VL+GL+AVRKRPGMYIG T +  GLHH+V+E+VDNS+DEALAGYC  I V I
Sbjct: 2   SYEAQNITVLEGLEAVRKRPGMYIGTTSE-RGLHHLVWEIVDNSVDEALAGYCDKIEVKI 60

Query: 64  HEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 123
             DN + V D+GRGIPT++HP+   SA E+++TVLHAGGKF++++YKVSGGLHGVGVSVV
Sbjct: 61  LPDNIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 120

Query: 124 NALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETERT--GTTVRFWPSAQTFTNIEF 181
           NALSE + + + + G +H Q YH G P+  + V+G  +    GTTVRF    + F  + +
Sbjct: 121 NALSEWLEVEVRKNGTVHYQKYHRGKPEEDVKVIGTCDENEHGTTVRFKADGEIFETLVY 180

Query: 182 HYDILAKRLRELSFLNSGVSIKLTDEREEDKKDH-FMYEGGIQAFVTHLNRNKTPIHEKV 240
           +Y  L+ RL+EL++LN G++I L+D R+++KK+  + ++GGI  F+  + +++T I EK 
Sbjct: 181 NYFTLSNRLKELAYLNKGLTIILSDLRKDEKKEEIYKFDGGILDFLNEIVKDETTIIEKP 240

Query: 241 FHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDK 300
           F  + E +D + V+V   +     E IY F N+I   +GGTH+ GFR ALT+ +N+    
Sbjct: 241 FFVSAE-QDNVGVDVTFTYTTSQNEVIYSFVNDINTHEGGTHVQGFRTALTKVINDVGKA 299

Query: 301 EGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAD 360
           +G  K       G+D REG+  ++S K+P P+F  QTK KL +SEV   V + ++  L  
Sbjct: 300 QGLLKDKDGKLMGNDIREGVVGIISTKIPQPQFEGQTKGKLGNSEVSGIVNTVVSNSLKI 359

Query: 361 FLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSE 420
           FL +NP+  K +  KI+++ +AREAA+KARE+  RK  L++  LPGKLADC  K     E
Sbjct: 360 FLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECE 419

Query: 421 LYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 480
           ++IVEGDSAGGSAKQGR+R NQAILPL+GKI+NVEKA   K L S E+  ++TA G  IG
Sbjct: 420 IFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIG 479

Query: 481 RDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKK 540
            + ++  KLRY  II+MTDADVDG+HIRTL+LTF YR M +LI  G +YIA PPLYKV  
Sbjct: 480 -ETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRHMIDLIYGGNVYIACPPLYKVAA 538

Query: 541 GKQEQY 546
           GKQ  Y
Sbjct: 539 GKQIIY 544



 Score = 94.7 bits (234), Expect = 1e-23
 Identities = 44/78 (56%), Positives = 61/78 (78%)

Query: 728 IKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVE 787
           + +  +  +IQRYKGLGEMNP+QLWETTM+P+ R +++V+I++A  AD LF  LMGD+VE
Sbjct: 558 MNQENKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFDKLMGDKVE 617

Query: 788 PRRAFIETNALKVANLDV 805
           PRR FIE +A  V N+D+
Sbjct: 618 PRREFIEEHAEYVKNIDI 635