Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 802 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Erwinia amylovora T8

 Score = 1223 bits (3164), Expect = 0.0
 Identities = 616/806 (76%), Positives = 700/806 (86%), Gaps = 5/806 (0%)

Query: 1   MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
           MSN+YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDN+IDEALAG+C DI+
Sbjct: 1   MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIL 60

Query: 61  VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
           VTIH DNSVSV DDGRGIPT +H EE +SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
Sbjct: 61  VTIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETERTGTTVRFWPSAQTFTNI- 179
           SVVNALSEK+ LTI R GK+H Q Y HGVPQA L V GET+ TGT VRFWPS QTFTN+ 
Sbjct: 121 SVVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGETDLTGTRVRFWPSHQTFTNVV 180

Query: 180 EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239
           EF Y+ILAKRLRELSFLNSGVSIKL D+R+  K DH+ YEGGI+AFV +LN+NKTPIH  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIKLEDKRD-GKNDHYHYEGGIKAFVEYLNKNKTPIHPN 239

Query: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299
           VF+F+ E+ DGI VEVA+QWNDGFQENIYCFTNNIPQRDGGTHLAGFR A+TRTLN YMD
Sbjct: 240 VFYFSTEK-DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359
           KEG+SKKA+ + +GDDAREGL AVVSVKVPDPKFSSQTKDKLVSSEVKSAVE  MNE L+
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358

Query: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419
           ++L E+P +AK V  KIIDAARAREAAR+AREMTRRKGALDLAGLPGKLADCQE+DPALS
Sbjct: 359 EYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479
           E+Y+VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML+SQEVATLITALGCGI
Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478

Query: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539
           GRDEYNPDKLRYH+IIIMTDADVDGSHIRTLLLTFFYRQMPE+IERG++YIAQPPLYKVK
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538

Query: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599
           KGKQEQYIKD+EAM+QYQ+A+A+DGA LH NA APAL G+PLE LV ++N+  K+++RM 
Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHANASAPALGGKPLEDLVSEFNSTRKMIKRME 598

Query: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659
           RRYP A+L+ LIY   + ++L A +A V  W   LV  LN  +   S Y+ +V  N EL+
Sbjct: 599 RRYPMALLNALIYHATL-SDLTA-QAPVNTWLDGLVTYLNENDQHGSSYNGMVRENRELH 656

Query: 660 VYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719
           ++ P ++VRTHGV  +Y L  + I   EY K+  L E L GLIE  A+I+RGER QPI+S
Sbjct: 657 LFEPVLRVRTHGVDTDYPLDNEFILGGEYRKICALGEQLRGLIEEDAYIERGERRQPIAS 716

Query: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779
           F  A+DWL KESRRGLS+QRYKGLGEMNP+QLWETTMDP++RRM++VTI+DAV AD+LFT
Sbjct: 717 FEQAIDWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAVAADQLFT 776

Query: 780 TLMGDQVEPRRAFIETNALKVANLDV 805
           TLMGD VEPRRAFIE NAL+ AN+D+
Sbjct: 777 TLMGDAVEPRRAFIEENALRAANIDI 802