Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., DNA topoisomerase IV, B subunit, proteobacterial from Enterobacter asburiae PDN3

 Score =  363 bits (932), Expect = e-104
 Identities = 217/556 (39%), Positives = 323/556 (58%), Gaps = 19/556 (3%)

Query: 1   MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
           M+  Y++ +I+VL GL+ VR+RPGMY     D T  +H+  EV+DNS+DEALAG+ K + 
Sbjct: 1   MTQTYNADAIEVLTGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHAKRVD 56

Query: 61  VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
           V +H D S+ V DDGRG+P ++HPEE V A E+I+  LHAGGKF + +Y+ SGGLHGVG+
Sbjct: 57  VILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGE--TERTGTTVRFWPSAQTFTN 178
           SVVNALS++V + + R G++++  + +G     L VVG      TGT+V FWP    F +
Sbjct: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGDKVQDLQVVGTCGKRNTGTSVHFWPDESFFDS 176

Query: 179 IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHE 238
             F    L   L+  + L  GV I  TD    +    + Y  G+  ++         + E
Sbjct: 177 PRFSVSRLTHLLKAKAVLCPGVEITFTD-HVNNTAQTWCYADGLNDYLCEAVNGLPTLPE 235

Query: 239 KVF--HFNQEREDGISVEVAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLN 295
           K F  +F+ + E   +V+ A+ W  +G +     + N IP   GGTH+ G R  L   + 
Sbjct: 236 KPFVGNFSGDTE---AVDWALLWLPEGGELLTESYVNLIPTMLGGTHVNGLRQGLLDAMR 292

Query: 296 NYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMN 355
            + +      +     S +D  +    V+SVK+ DP+F+ QTK++L S +  + V   + 
Sbjct: 293 EFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVK 351

Query: 356 EKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKD 415
           +    +L +N   A+ +    I +A+ R   R A+++ R+K     A LPGKLADC  +D
Sbjct: 352 DAFTLWLNQNVQAAEMLAEMAISSAQRR--LRAAKKVVRKKLTSGPA-LPGKLADCTAQD 408

Query: 416 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 475
              +EL++VEGDSAGGSAKQ R+R+ QAI+PLKGKILN  +   D++L+SQEV  +  A+
Sbjct: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468

Query: 476 GCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPL 535
             GI  D  +  +LRY  I I+ DAD DG HI TLL   F +    L++ G++++A PPL
Sbjct: 469 --GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFKTLVKNGHVHVALPPL 526

Query: 536 YKVKKGKQEQYIKDEE 551
           Y++  GK+  Y   EE
Sbjct: 527 YRIDLGKEVYYALTEE 542



 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 3/59 (5%)

Query: 728 IKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQV 786
           +K  +   ++QR+KGLGEMNP QL ETT+DP TRR++Q+TI D    DE  T  M D +
Sbjct: 551 LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTISD---EDEQQTNAMMDML 606