Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., DNA topoisomerase 4 subunit B from Escherichia coli ECRC62

 Score =  367 bits (941), Expect = e-105
 Identities = 217/554 (39%), Positives = 321/554 (57%), Gaps = 15/554 (2%)

Query: 1   MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
           M+  Y++ +I+VL GL+ VR+RPGMY     D T  +H+  EV+DNS+DEALAG+ K + 
Sbjct: 1   MTQTYNADAIEVLTGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHAKRVD 56

Query: 61  VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
           V +H D S+ V DDGRG+P ++HPEE V A E+I+  LHAGGKF + +Y+ SGGLHGVG+
Sbjct: 57  VILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGE--TERTGTTVRFWPSAQTFTN 178
           SVVNALS++V + + R G++++  + +G     L VVG      TGT+V FWP    F +
Sbjct: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176

Query: 179 IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHE 238
             F    L   L+  + L  GV I   DE   + +  + Y+ G+  ++         + E
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDE-INNTEQRWCYQDGLNDYLAEAVNGLPTLPE 235

Query: 239 KVFHFNQEREDGISVEVAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNY 297
           K F       D  +V+ A+ W  +G +     + N IP   GGTH+ G R  L   +  +
Sbjct: 236 KPF-IGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294

Query: 298 MDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEK 357
            +      +     S +D  +    V+SVK+ DP+F+ QTK++L S +  + V   + + 
Sbjct: 295 CEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353

Query: 358 LADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPA 417
              +L +N   A+ +    I +A+ R   R A+++ R+K     A LPGKLADC  +D  
Sbjct: 354 FILWLNQNVQAAELLAEMAISSAQRR--MRAAKKVVRKKLTSGPA-LPGKLADCTAQDLN 410

Query: 418 LSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477
            +EL++VEGDSAGGSAKQ R+R+ QAI+PLKGKILN  +   D++L+SQEV  +  A+  
Sbjct: 411 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI-- 468

Query: 478 GIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYK 537
           GI  D  +  +LRY  I I+ DAD DG HI TLL   F +    L++ G++Y+A PPLY+
Sbjct: 469 GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYR 528

Query: 538 VKKGKQEQYIKDEE 551
           +  GK+  Y   EE
Sbjct: 529 IDLGKEVYYALTEE 542



 Score = 57.4 bits (137), Expect = 2e-12
 Identities = 25/43 (58%), Positives = 35/43 (81%)

Query: 728 IKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIED 770
           +K  +   ++QR+KGLGEMNP QL ETT+DP TRR++Q+TI+D
Sbjct: 551 LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593