Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., DNA topoisomerase IV subunit B from Dickeya dianthicola ME23

 Score =  367 bits (943), Expect = e-106
 Identities = 219/552 (39%), Positives = 321/552 (58%), Gaps = 15/552 (2%)

Query: 3   NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVT 62
           ++Y++ +I+VL GL+ VR+RPGMY     D T  +H+  EV+DNS+DEALAG+ + I V 
Sbjct: 4   SSYNADAIEVLSGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHARRIDVI 59

Query: 63  IHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122
           +H D S+ V DDGRG+P ++HPEE V A E+I+  LHAGGKF + +Y+ SGGLHGVG+SV
Sbjct: 60  LHPDQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 123 VNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETER--TGTTVRFWPSAQTFTNIE 180
           VNALS +V +T+ R G+++   + +G     L V G   R  TGT V FWP    F +  
Sbjct: 120 VNALSTRVEVTVRRDGQVYDIAFENGDKVQDLTVTGTCGRRNTGTRVHFWPDVTFFDSPR 179

Query: 181 FHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKV 240
           F    L   L+  + L  GV I   D    D +  + Y+GG+  ++         + EK 
Sbjct: 180 FSVLSLTHLLKAKAVLCPGVEIVFKD-GVNDTEQRWCYQGGLSDYLCEAVNGLPTLPEKP 238

Query: 241 FHFNQEREDGISVEVAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299
           F       D  +VE A+ W  +G +     + N IP   GGTH+ G R  L   +  + +
Sbjct: 239 F-IGVIPGDTEAVEWALLWLPEGGELLTESYVNLIPTLQGGTHVNGLRQGLLDAMREFCE 297

Query: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359
                 +     S +D  E    V+S+K+ DP+F+ QTK++L S +  + V   + +  +
Sbjct: 298 FRNILPRG-VKLSAEDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFS 356

Query: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419
            +L +N   A+ +    I +A+ R   R A+++ R+K     A LPGKLADC  +D   +
Sbjct: 357 LWLNQNVQAAEQLAEMAISSAQRR--MRAAKKVVRKKLTSGPA-LPGKLADCTLQDLNKT 413

Query: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479
           EL++VEGDSAGGSAKQ R+R+ QAI+PLKGKILN  +   D++L+SQEV  +  A+  GI
Sbjct: 414 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI--GI 471

Query: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539
             D  +  +LRY  + I+ DAD DG HI TLL   F R    L++ G++++A PPLY++ 
Sbjct: 472 DPDSDDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVQGGHVHVAMPPLYRID 531

Query: 540 KGKQEQYIKDEE 551
            GK+  Y  DEE
Sbjct: 532 LGKEVYYALDEE 543



 Score = 57.4 bits (137), Expect = 2e-12
 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 4/81 (4%)

Query: 728 IKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT---TLMGD 784
           +K  +   ++QR+KGLGEMNP QL ETT+DP TRR++Q+TI +      L T    L   
Sbjct: 552 LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTINEQDIEQTLATMDMLLAKK 611

Query: 785 QVEPRRAFIETNALKVANLDV 805
           + E RR +++    K A LDV
Sbjct: 612 RAEDRRNWLQEKGDK-AELDV 631