Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  246 bits (629), Expect = 2e-69
 Identities = 180/569 (31%), Positives = 282/569 (49%), Gaps = 61/569 (10%)

Query: 5   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGT----GLHHMVFEVVDNSIDEALAGYCKDIV 60
           Y   SI+ L   + +R RPGMYIG   DG+    G++ +V E++DNSIDE + G+ + I 
Sbjct: 8   YTEDSIRSLDWKEHIRLRPGMYIGKLGDGSAQDDGIYVLVKEILDNSIDEHMMGHGRTID 67

Query: 61  VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
           + I E + V + D GRGIP        +      ++ ++ GGK+D  +++ S GL+GVG 
Sbjct: 68  IKISE-HKVEIRDYGRGIP--------LGKVVDCVSKINTGGKYDSGAFQKSVGLNGVGT 118

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETERTGTTVRFWPSAQTFTNIE 180
             VNALS+   +  YR G+     +  G       V   ++R GT + F P A  F N  
Sbjct: 119 KAVNALSQYFKVQSYRDGETKIAEFEKGELIEDRPVEKSSDRNGTKIVFSPDATVFKNYH 178

Query: 181 FHYDILAKRLRELSFLNSGVSIKLTDERE-EDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239
           F  + L  ++   +FLNSG++I    ++   DK  H +    +   V   ++    IH K
Sbjct: 179 FIPEYLENQIWNYAFLNSGLTINFNGKKYFSDKGLHDL----LDRKVDDDSKRYPIIHLK 234

Query: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299
                     G  +E+A+   + + E  + F N      GGTHLA FR A+ + +     
Sbjct: 235 ----------GNDIEMALTHTNQYGEEYHSFVNGQYTTQGGTHLAAFREAIVKAV----- 279

Query: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEV-------KSAVES 352
           +E F K   AA    D R+ + A ++V+V +P F SQTK KL S  V       ++ V  
Sbjct: 280 REFFKKDYDAA----DIRQSIAAAIAVRVQEPVFESQTKTKLGSHSVGPDGPTLRTFVND 335

Query: 353 AMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPG-KLADC 411
            +  +L ++L +N   A  +  +I+ + R R+     +++   +     A L   KL DC
Sbjct: 336 FVKTELDNYLHKNQETANALLKRILQSERERKEISGIKKLANERAKK--ANLHNRKLRDC 393

Query: 412 Q---------EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 462
           +         E+    + L+I EGDSA GS  + R+ + QA+  L+GK LN        +
Sbjct: 394 RVHYDDVKANEEKKNDTMLFITEGDSASGSITKSRDVQTQAVFSLRGKPLNCFGMTKKVV 453

Query: 463 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEL 522
             ++E   L  AL       E   D LRY  I+I TDADVDG HIR L++T+F +  PEL
Sbjct: 454 YENEEFNLLQHALNI-----EDGVDGLRYRKIVIATDADVDGMHIRLLIMTYFLQFFPEL 508

Query: 523 IERGYIYIAQPPLYKVKKGKQEQYIKDEE 551
           ++ G++YI   PL++V+  K+  Y   E+
Sbjct: 509 VKNGHLYILDTPLFRVRNKKETIYCYSED 537



 Score = 30.0 bits (66), Expect = 4e-04
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 737 IQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIETN 796
           I R+KGLGE++P++        E  R+  + +       +L T  MG     R++FI  N
Sbjct: 552 ITRFKGLGEISPEEF--GGFIGEDIRLEPIILNKETKIADLLTFFMGKNTPNRQSFIIDN 609

Query: 797 ALKV 800
            LKV
Sbjct: 610 -LKV 612