Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 804 a.a., DNA gyrase, subunit B from Escherichia coli BL21

 Score = 1260 bits (3260), Expect = 0.0
 Identities = 628/806 (77%), Positives = 706/806 (87%), Gaps = 3/806 (0%)

Query: 1   MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
           MSN+YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDN+IDEALAG+CK+I+
Sbjct: 1   MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60

Query: 61  VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
           VTIH DNSVSV DDGRGIPT +HPEE VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
Sbjct: 61  VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETERTGTTVRFWPSAQTFTNI- 179
           SVVNALS+K+ L I R GKIH Q Y HGVPQAPLAV GETE+TGT VRFWPS +TFTN+ 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVT 180

Query: 180 EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239
           EF Y+ILAKRLRELSFLNSGVSI+L D+R+  K+DHF YEGGI+AFV +LN+NKTPIH  
Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRD-GKEDHFHYEGGIKAFVEYLNKNKTPIHPN 239

Query: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299
           +F+F+ E+ DGI VEVA+QWNDGFQENIYCFTNNIPQRDGGTHLAGFR A+TRTLN YMD
Sbjct: 240 IFYFSTEK-DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298

Query: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359
           KEG+SKKA+ + +GDDAREGL AVVSVKVPDPKFSSQTKDKLVSSEVKSAVE  MNE LA
Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358

Query: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419
           ++L ENP++AK V  KIIDAARAREAAR+AREMTRRKGALDLAGLPGKLADCQE+DPALS
Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418

Query: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479
           ELY+VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI
Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478

Query: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539
           GRDEYNPDKLRYH+IIIMTDADVDGSHIRTLLLTFFYRQMPE++ERG++YIAQPPLYKVK
Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538

Query: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599
           KGKQEQYIKD+EAM+QYQ+++A+DGA LH NA APALAGE LEKLV +YNA  K++ RM 
Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598

Query: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659
           RRYP AML ELIY P +     +D+  V  W   LV +LN KE   SQ+   V  NAE N
Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658

Query: 660 VYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719
           ++ P ++VRTHGV  +Y L  + I   EY ++  L E L GL+E  AFI+RGER QP++S
Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718

Query: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779
           F  ALDWL+KESRRGLSIQRYKGLGEMNP+QLWETTMDPE+RRM++VT++DA+ AD+LFT
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778

Query: 780 TLMGDQVEPRRAFIETNALKVANLDV 805
           TLMGD VEPRRAFIE NALK AN+D+
Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804