Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., DNA topoisomerase 4 subunit B from Alteromonas macleodii MIT1002

 Score =  364 bits (934), Expect = e-105
 Identities = 211/553 (38%), Positives = 316/553 (57%), Gaps = 14/553 (2%)

Query: 1   MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
           MSN Y+S +I+VL GLD V++RPGMY     D T  +H+  EV+DNS+DEALAG+  +I 
Sbjct: 1   MSNQYNSDAIEVLNGLDPVKRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHASNIK 56

Query: 61  VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
           V +HED S+ V DDGRG+P ++HPEE +S  E+I+  LHAGGKF + +Y  SGGLHGVG+
Sbjct: 57  VILHEDQSLEVIDDGRGMPVDIHPEEGISGVELILCKLHAGGKFSNKNYAFSGGLHGVGI 116

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGE--TERTGTTVRFWPSAQTFTN 178
           SVVNALS +V +TI R   ++   + +G     L V+       TGT V FWP  Q F +
Sbjct: 117 SVVNALSTRVEVTIRRDSNVYQIAFENGDKVEDLQVIDTCGKRNTGTRVHFWPDPQYFDS 176

Query: 179 IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHE 238
            +F    L   LR  + L+ G+ I+  D +   +   + YE G++ ++         +  
Sbjct: 177 AKFSASRLVHNLRAKAVLSPGLRIRF-DNKITKESQEWYYEDGLKDYLYQAVEEFETLPS 235

Query: 239 KVFHFNQEREDGISVEVAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNY 297
                     +  + + A+ W  +G       + N IP   GGTH+ G R  L  ++  +
Sbjct: 236 DTPFVGTFSGNTEAADWAVMWLPEGGDLVTESYVNLIPTAQGGTHVNGLRQGLLESMREF 295

Query: 298 MDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEK 357
            +      +     S DD  +    ++S K+ DP+F+ QTK++L S +  + V   + + 
Sbjct: 296 CEFRNLMPRG-VKLSPDDIWDRCAYILSTKMQDPQFAGQTKERLSSRQASAFVSGVVKDA 354

Query: 358 LADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPA 417
            + +L ++   A+ +    I+ A+ R   R+ +++ R+K     A LPGKL DC  +D +
Sbjct: 355 FSLWLNQHTEIAEALAEMCINNAQRR--LRQTKKVARKKVTQGPA-LPGKLTDCSSQDIS 411

Query: 418 LSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477
            SEL++VEGDSAGGSAKQ R+R+ QAI+PL+GKILN  +    ++L+SQE+  +  AL  
Sbjct: 412 YSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNSWEVDSSQVLASQEIHDISVAL-- 469

Query: 478 GIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYK 537
           GI  D  +   LRY  I I+ DAD DG HI TLL   F R    L+E+G++Y+A PPL++
Sbjct: 470 GIDPDSTDLSGLRYGKICILADADSDGLHIATLLCALFVRHFRTLVEQGHVYVAMPPLFR 529

Query: 538 VKKGKQEQYIKDE 550
           +  GK+  Y  DE
Sbjct: 530 IDVGKEVYYALDE 542



 Score = 66.6 bits (161), Expect = 4e-15
 Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 1/60 (1%)

Query: 724 LDWLIKESRRG-LSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLM 782
           LD +  E +RG +++QR+KGLGEMNP QL ETTMDP TRR++Q+TIEDA    EL   L+
Sbjct: 549 LDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIEDAEEMMELMDMLL 608