Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 710 a.a., DNA gyrase subunit B from Agrobacterium fabrum C58

 Score =  433 bits (1114), Expect = e-125
 Identities = 248/560 (44%), Positives = 353/560 (63%), Gaps = 17/560 (3%)

Query: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61
           S++Y +SSI+VL+GL+ VR RPGMYIG TD+   LHH+  EV+DNS+DEA+AG+   I V
Sbjct: 69  SDDYGASSIRVLEGLEPVRMRPGMYIGGTDE-KALHHLFAEVIDNSMDEAVAGHANFIEV 127

Query: 62  TIHEDNSVSVSDDGRGIPTEMHPEEK-VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
            +  +  ++V+D+GRGIP E HP+    S  EVIMT LHAGGKFD  +Y+ SGGLHGVGV
Sbjct: 128 HLDAEGFLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGV 187

Query: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVRFWPSAQTF-TN 178
           SVVNALS+ + + + R  K++ Q +  G P   L  +G+   R GT VRF P  Q F  +
Sbjct: 188 SVVNALSDLLEVEVARNRKLYRQRFSRGAPIGGLEELGDVHNRRGTRVRFHPDPQIFGDH 247

Query: 179 IEFHYDILAKRLRELSFLNSGVSIK-------LTDEREEDKKDHFMYEGGIQAFVTHLNR 231
            +F    + +  R  ++L  GV I+       +  + E  +K  F + GG++ ++     
Sbjct: 248 AKFEPARIFRMARSKAYLFGGVEIRWSCDPGMVPADGEIPEKAVFHFPGGLKDYLAATLG 307

Query: 232 NKTPIHEKVFHFNQEREDGI-SVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290
            +  +  ++F    E+  G  ++E A+ W  G    I+ + N IP  +GGTH AGFR AL
Sbjct: 308 KEFTVTREIFSGRTEKTGGHGALEWAVTWYGG-DTQIHSYCNTIPTPEGGTHEAGFRIAL 366

Query: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350
           T+ L NY +    +K+A+  T+ DD       ++SV + +P+F  QTKDKL + E +  V
Sbjct: 367 TKGLKNYAELTQ-NKRAREITT-DDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQRIV 424

Query: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410
           E+A+ +    +L  NP EA  +   +I+ A  R   RK +E+ R+     L  LPGKLAD
Sbjct: 425 ENALRDPFDHYLTGNPGEAAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLR-LPGKLAD 483

Query: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470
           C +     +EL+IVEGDSAGGSAKQ RNR NQAILPL+GKILNV  A  +K+ ++Q++A 
Sbjct: 484 CSQNTAENAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVGSASREKLSANQQIAD 543

Query: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530
           LI ALGCG  R +Y  + LRY  IIIMTDADVDG+HI +LL+TFFY++MPELI   ++Y+
Sbjct: 544 LIQALGCGT-RTKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGNHLYL 602

Query: 531 AQPPLYKVKKGKQEQYIKDE 550
           A PPLY +++G +  Y +D+
Sbjct: 603 AVPPLYVIRQGAKSAYARDD 622



 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 735 LSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDA--VGADELFTTLMGDQVEPRRAF 792
           + I R+KGLGEM   QL ETTMDPE R +++V I+D    G  E    LMG + + R  F
Sbjct: 638 VEIGRFKGLGEMMAAQLKETTMDPEKRTLLRVEIDDVDFEGTREAVDNLMGTKADARFRF 697

Query: 793 IETNALKVANLDV 805
           I+  A    NLD+
Sbjct: 698 IQERAAFADNLDI 710