Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 811 a.a., DNA gyrase subunit B from Agrobacterium fabrum C58

 Score =  875 bits (2262), Expect = 0.0
 Identities = 457/805 (56%), Positives = 580/805 (72%), Gaps = 12/805 (1%)

Query: 5   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVTIH 64
           Y + SIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMV+EVVDN+IDEALAG+   + VT++
Sbjct: 15  YGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADLVTVTLN 74

Query: 65  EDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124
            D SV+V+D+GRGIPT++H  E VSAAEVIMT LHAGGKFD NSYKVSGGLHGVGVSVVN
Sbjct: 75  ADGSVTVTDNGRGIPTDIHSSEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVN 134

Query: 125 ALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVRFWPSAQTFTNIEFHY 183
           ALS  + L I R GK+H   + HGV  APL+V+GE E R+GT V F  S QTFT  ++ Y
Sbjct: 135 ALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTFLASPQTFTMTDYDY 194

Query: 184 DILAKRLRELSFLNSGVSIKLTDEREED-KKDHFMYEGGIQAFVTHLNRNKTPIHEKVFH 242
             L  RLREL+FLNSGV I LTD+R  D K+   +Y+GG++AFV +L+R K P+ +K   
Sbjct: 195 GTLEHRLRELAFLNSGVRILLTDKRHSDVKQQELLYDGGLEAFVRYLDRAKKPLVDKPIA 254

Query: 243 FNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEG 302
            + E+ DGI+VEVA+ WND + EN+ CFTNNIPQRDGGTH+AGFR ALTR + +Y D  G
Sbjct: 255 IHSEK-DGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVTSYADTSG 313

Query: 303 FSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFL 362
             K+ + +  G+D REGLTA++SVKVPDPKFSSQTKDKLVSSEV+  VES +NE L+ +L
Sbjct: 314 IMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALSTWL 373

Query: 363 AENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELY 422
            E+PSEAK +  K+++AA AREAARKARE+TRRKGALD+A LPGKLADC E+DPA SEL+
Sbjct: 374 EEHPSEAKILIGKVVEAAVAREAARKARELTRRKGALDIASLPGKLADCSERDPAKSELF 433

Query: 423 IVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 482
           +VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG  IG+D
Sbjct: 434 LVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTSIGKD 493

Query: 483 EYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGK 542
           E+N DKLRYH IIIMTDADVDG+HIRTLLLTFF+RQMPELIERG++YIAQPPLYKV +GK
Sbjct: 494 EFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPLYKVTRGK 553

Query: 543 QEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRRY 602
             QY+KDE+A+ +Y +++ ++ A L +        G  L +++        L++ +  RY
Sbjct: 554 SVQYLKDEKALEEYLISMGIEEASLTLGT-GEVRVGADLREVILDALRMRSLIDGLHSRY 612

Query: 603 PYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLN--AKEVGASQYSVLVEHNAELNV 660
             +++ +      +N EL AD A  +     +  +L+  A+E       V++E       
Sbjct: 613 SRSIVEQAAIAGALNPELSADAARAQETVAEVARRLDMIAEETERGWSGVVLEDGG---- 668

Query: 661 YLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSF 720
              + +    GV     L   L+ S +   +  L      +      ++R +    ++  
Sbjct: 669 --LRFERMVRGVKEISTLDMGLLGSADARHIDQLVARTRDIYATPPVLQRKDGSMELAGP 726

Query: 721 AAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTT 780
            A LD +    R+GLS+QRYKGLGEMN +QLWETT+D   R ++QV + DA  AD LF  
Sbjct: 727 RALLDAIFAAGRKGLSMQRYKGLGEMNAEQLWETTLDANVRSLLQVRVNDATDADGLFAR 786

Query: 781 LMGDQVEPRRAFIETNALKVANLDV 805
           LMGD+VEPRR FI+ NAL VANLD+
Sbjct: 787 LMGDEVEPRRDFIQENALNVANLDI 811