Pairwise Alignments

Query, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., DNA topoisomerase 4 subunit B from Acinetobacter radioresistens SK82

 Score =  386 bits (992), Expect = e-111
 Identities = 216/555 (38%), Positives = 322/555 (58%), Gaps = 16/555 (2%)

Query: 3   NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVT 62
           + Y + S++VL GLD VR+RPGMY     D T  +H+  EV+DN++DEALAG+   I V 
Sbjct: 2   SQYTAQSLEVLSGLDPVRRRPGMYT----DTTRPNHLAQEVIDNAVDEALAGHANQIAVK 57

Query: 63  IHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122
           +++D S+SV D+GRG+P ++HPE   S  E+I+T LHAGGKF  ++Y+ SGGLHGVG+SV
Sbjct: 58  VYKDGSLSVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 123 VNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVV---GETERTGTTVRFWPSAQTFTNI 179
           VNALS +V + + R G ++   + HG P APL V+        +GTTVRFWP  + F + 
Sbjct: 118 VNALSTRVEVEVQRQGNLYKMAFEHGEPVAPLEVLEGKAPKRASGTTVRFWPETRYFDSP 177

Query: 180 EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239
           +F    L   L+  + L +G+ I   DE   +K + + +E G+  ++    + +  + + 
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKINYIDEINNEKIE-WQFENGLVDYLMDELQEREIVPQP 236

Query: 240 VFHFNQEREDGISVEVAMQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYM 298
            F    E E   S E A+ WN +G ++    + N IP   GGTH+ G R  +T  L  + 
Sbjct: 237 AFVATGEAERA-SAEFAICWNTEGGEQIQESYVNLIPTAQGGTHVNGLRSGITDALREFC 295

Query: 299 DKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKL 358
           +      +     S +D  +G+  ++S+K  +P+FS QTK++L S E  S V++   +  
Sbjct: 296 ELRNLLPR-NLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASSIVQNIAKDAF 354

Query: 359 ADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAL 418
             +L +N   A  +    I  A  R    KA +   RK  +    LPGKLADC       
Sbjct: 355 TLWLNQNSEIAMQLAEMAISKAGRR---LKAAKKVERKKIVSGPALPGKLADCAGLTRED 411

Query: 419 SELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 478
           SEL+IVEGDSAGGSAKQ R++  QAI+P++GKILN  +   D++L SQEV  +  A+G  
Sbjct: 412 SELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLGSQEVHDIAIAIGVD 471

Query: 479 IGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKV 538
            G D+ +  +LRY  + I+ DAD DG HI TLL   F +  P L+E G++++A PPL+++
Sbjct: 472 PGSDDLS--ELRYGKVCILADADSDGLHIATLLCALFVKHFPALVEEGHLFVAMPPLFRI 529

Query: 539 KKGKQEQYIKDEEAM 553
             GK   Y  DE+ +
Sbjct: 530 DDGKDVHYALDEDEL 544



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 24/44 (54%), Positives = 31/44 (70%)

Query: 727 LIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIED 770
           L K   +   I R+KGLGEMN  QL ETTMDP TRR++Q+ ++D
Sbjct: 548 LKKTKTKTPQITRFKGLGEMNASQLRETTMDPNTRRLVQLDLDD 591