Pairwise Alignments

Query, 366 a.a., DNA polymerase III subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 372 a.a., Beta sliding clamp from Xanthobacter sp. DMC5

 Score =  265 bits (677), Expect = 1e-75
 Identities = 146/373 (39%), Positives = 223/373 (59%), Gaps = 8/373 (2%)

Query: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60
           MK T+ER+ L+K L  V   +  R ++PIL N+L+K  +  L + ATDL++E++  V  E
Sbjct: 1   MKVTVERAELLKSLSHVHRVVERRNTIPILANVLIKAAKGTLELKATDLDLEVVESVPAE 60

Query: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLEGDR--IQVRSGRSRFSLATLPASDFPN 118
              +AG+ TVPA    DI R LPD A + +   G+R  + VR+ R+RFSL TLP +DFP+
Sbjct: 61  TG-QAGATTVPAHVLYDIVRKLPDGAQVQLEAGGERGTLTVRASRARFSLQTLPEADFPD 119

Query: 119 IEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGT----TLRSVATDG 174
           +   +      +  AE R L++KTQF+++ ++ RYYLNG+   +        LR+VATDG
Sbjct: 120 LAAGEFSHTFKVKGAEFRRLVDKTQFAISTEETRYYLNGIYLHVTEAGGKAMLRAVATDG 179

Query: 175 HRMAVAQAQLGADF-AQKQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFT 233
           HR+A A+ +  A       +IVPRK V E+ KLL+  E  V + +  + +R +V   V T
Sbjct: 180 HRLAQAELEAPAGSQGLPGVIVPRKTVAEIQKLLEDKEAEVTISLSATKIRVQVGAIVLT 239

Query: 234 SKLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRIT 293
           SKL+DG FPDY RV+PQ   KTL    +E   A  R + +S+E+ R V+++L D  M ++
Sbjct: 240 SKLIDGTFPDYGRVIPQGNDKTLIVDKDEFAAAVDRVSTVSSERGRAVKLSLGDGKMVLS 299

Query: 294 ANNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRCDNVRVSMSDANASALVENVD 353
             NP+   A E L+V +  EP++IGFN  Y+LD+ + L  D   + ++D  +  LV +  
Sbjct: 300 VTNPDSGSATEELEVDYTAEPLDIGFNSRYLLDITSQLEGDTAELKLADPGSPTLVRDST 359

Query: 354 DDSAMYVVMPIRL 366
              A+YV+MP+R+
Sbjct: 360 KTDALYVLMPMRV 372