Pairwise Alignments

Query, 366 a.a., DNA polymerase III subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., DNA polymerase III beta subunit (EC 2.7.7.7) from Variovorax sp. SCN45

 Score =  277 bits (708), Expect = 4e-79
 Identities = 140/358 (39%), Positives = 232/358 (64%), Gaps = 1/358 (0%)

Query: 10  LIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGEFEAGSIT 69
           ++  LQ V+G +  R +LPIL N+L++    QL +T +DLE+++ +   L G+    + T
Sbjct: 11  VLAALQSVAGIVERRHTLPILANVLIRKTGGQLQLTTSDLEIQIRTTAELGGDEGNFTTT 70

Query: 70  VPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIEDWQSEVQV- 128
           + ARK +DI R +P    +++     ++ ++ G+SRF+L +LPA DFP +++  +   V 
Sbjct: 71  IGARKLIDILRTMPSDQTVSLESSASKLVLKGGKSRFTLQSLPAEDFPLVQEAANFGPVF 130

Query: 129 SLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVAQAQLGADF 188
           S+ Q  L+ L+ +  F+MA  D+RYYLNG+LF  +G  L  VATDGHR+A + A L  + 
Sbjct: 131 SVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAFSSATLDVEV 190

Query: 189 AQKQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVDGRFPDYRRVL 248
            ++++I+PRK VLE+ +LL   E  + +Q  ++  +       F +KLV+G+FPDY RV+
Sbjct: 191 PRQEVILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTKLVEGKFPDYNRVI 250

Query: 249 PQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITANNPEQEEAEELLDV 308
           P++   T+  G   L  +  R AIL++EKF+GVR+N+    +RI +NN EQEEA++ LD+
Sbjct: 251 PKNHKNTVTLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRIASNNAEQEEAQDELDI 310

Query: 309 SFEGEPIEIGFNVSYILDVLNTLRCDNVRVSMSDANASALVENVDDDSAMYVVMPIRL 366
            + G+ IEIGFNV+Y++D L+ +  D V++ ++D+N+SAL+   ++ S  YVVMP+R+
Sbjct: 311 DYGGDAIEIGFNVTYLIDALSNMDQDMVKLDLADSNSSALLTIPENASFKYVVMPMRI 368



 Score = 40.0 bits (92), Expect = 1e-07
 Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 3   FTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLEGE 62
           F++ +  L   L QVS  +        L  +L   E  QLS+ ATD      S  TL+ E
Sbjct: 130 FSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSLVATDGHRLAFSSATLDVE 189

Query: 63  FEAGSITVPARKFLDICRGLPDS-AVITVLLEGDRIQVRSGRSRF--SLATLPASDFPNI 119
                + +P +  L++ R L D+   I +    ++ +   G   F   L      D+  +
Sbjct: 190 VPRQEVILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTKLVEGKFPDYNRV 249

Query: 120 EDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAV 179
                +  V+L +A L   +++T    + +       G+   I+  TLR +A++      
Sbjct: 250 IPKNHKNTVTLGRAPLLASLQRTAILTSEK-----FKGVRLNIEPGTLR-IASNNAEQEE 303

Query: 180 AQAQLGADFAQKQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRA 225
           AQ +L  D+    I +       +  L +  +  V L +  SN  A
Sbjct: 304 AQDELDIDYGGDAIEIGFNVTYLIDALSNMDQDMVKLDLADSNSSA 349