Pairwise Alignments

Query, 366 a.a., DNA polymerase III subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., DNA polymerase III beta subunit (EC 2.7.7.7) from Sphingobium sp. HT1-2

 Score =  239 bits (611), Expect = 7e-68
 Identities = 132/372 (35%), Positives = 217/372 (58%), Gaps = 8/372 (2%)

Query: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVE-ENQLSMTATDLEVELISRVTL 59
           MK TIER+ L+K L  V   +  R ++PIL N+L++   +  + + ATDL+++++  V+ 
Sbjct: 1   MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEASADGAIKLMATDLDLQVVESVSA 60

Query: 60  EGEFEAGSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNI 119
           + E +AG+ T+ A    DI R LP+ + +++     ++ +++GR+RF+L+TLP  DFP I
Sbjct: 61  QVE-QAGATTISAHTLFDIARKLPEGSQVSLQAADGKMLIQAGRARFNLSTLPRDDFPVI 119

Query: 120 EDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEID---GTTLRSVATDGHR 176
            +        L    L+ +I+KT+F+++ ++ RYYLNG+ F +       L++ ATDGHR
Sbjct: 120 AEGDLPTSFELPAETLKQIIDKTRFAISTEETRYYLNGIYFHVSDEGSPVLKAAATDGHR 179

Query: 177 MAVAQAQL--GADFAQKQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234
           +A        GAD     II+PRK + EL KLLD  E  V + +  S +R  +   + TS
Sbjct: 180 LARVTVPRPDGAD-GMPGIIIPRKCIAELRKLLDEVEGSVQVSLSASKIRFGLGSAILTS 238

Query: 235 KLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITA 294
           KL+DG FPDY RV+P    K L+       +   R A ++ EK R V+++L  + + ++ 
Sbjct: 239 KLIDGTFPDYSRVIPTANDKLLKIDPRSFEEGVDRVATIATEKTRAVKMSLDKDKITLSV 298

Query: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRCDNVRVSMSDANASALVENVDD 354
            +PE   A E +  +F+GE  +IGFN  Y+LD+L  +  D V + ++DA A  L+   D 
Sbjct: 299 TSPENGTAAEEVPGAFQGEGFDIGFNARYLLDILGQIDTDIVELHLADAAAPTLIRENDR 358

Query: 355 DSAMYVVMPIRL 366
             A+YV+MP+R+
Sbjct: 359 SPALYVLMPMRV 370