Pairwise Alignments

Query, 366 a.a., DNA polymerase III subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., Beta sliding clamp from Acinetobacter radioresistens SK82

 Score =  288 bits (736), Expect = 2e-82
 Identities = 165/382 (43%), Positives = 235/382 (61%), Gaps = 16/382 (4%)

Query: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTL- 59
           M+  I +  L+  L  V G +  R +L IL N+ ++     L++T +DLEVEL++   L 
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQASPQALTITGSDLEVELVASTGLS 60

Query: 60  EGE-FEAGSITVPARKFLDICRGLPDSAVITV-LLEGDRIQVRSGRSRFSLATLPASDFP 117
           EG   + G  TVPARK +DIC+ LP +A+I + + E  R  ++SG SRF L TLPA D+P
Sbjct: 61  EGACLQPGETTVPARKLMDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYP 120

Query: 118 NIEDWQSE-VQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHR 176
            +    S+  QV +TQ EL+ L EKT F+MA QDVR+YL G L EID T LR+V TDGHR
Sbjct: 121 LLNHDNSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDETQLRAVTTDGHR 180

Query: 177 MAVAQAQLGADFAQK-QIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNH------ 229
           +A+ +    +  +Q  Q IVPRK V EL +LL   ++ + L IG   L   +        
Sbjct: 181 LALCETLASSTASQPVQAIVPRKAVAELQRLLSIEDEQLTLLIGRELLNVTIQTPSRDKE 240

Query: 230 -----FVFTSKLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVN 284
                  FT+KL+DG+FPDYRRV+P+   KT+Q   +  +Q+  R AILSNEK RGV +N
Sbjct: 241 QGEITVRFTTKLIDGKFPDYRRVIPRGGDKTVQIAHDVFKQSLQRVAILSNEKLRGVFLN 300

Query: 285 LADNGMRITANNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRCDNVRVSMSDAN 344
              + +++ ANNPEQ+EA E L + +   P+E+ FN  Y+L+VLN L  D+V ++M++AN
Sbjct: 301 FNADSLQLRANNPEQDEAIEDLAIQYNNSPLEMSFNAQYLLEVLNVLDGDDVVMTMTEAN 360

Query: 345 ASALVENVDDDSAMYVVMPIRL 366
            S LV++       YVVMP+R+
Sbjct: 361 QSVLVQDPAQQDQTYVVMPMRV 382