Pairwise Alignments

Query, 248 a.a., amino acid ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., histidine/lysine/arginine/ornithine transporter subunit (NCBI) from Escherichia coli BW25113

 Score = 94.4 bits (233), Expect = 2e-24
 Identities = 76/254 (29%), Positives = 117/254 (46%), Gaps = 27/254 (10%)

Query: 12  LALSSATVQAAT---EVKVGMSGRYFPFTFVK-QDELQGFEVDVWNEIGKRNDYKVEFVT 67
           LA SSAT   A     +++G    Y PF     Q EL GF++D+  E+ KR + +  FV 
Sbjct: 12  LAFSSATAAFAAIPQNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELCKRINTQCTFVE 71

Query: 68  ANFSGLLGLLETGRIDTISNQITITDARKAKYLFSDPYVIDGAQITVRKGNEAIKGIDDL 127
                L+  L+  +ID I + ++IT+ R+ +  F+D      +++ V K ++    ++ L
Sbjct: 72  NPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKNSDIQPTVESL 131

Query: 128 AGKTVAVNLGSNFEQLLRNHDKDGKINIKTY--DTGIEHDVALGRADAFVMDRLSALELI 185
            GK V V  G+  E     H     I I +Y     I  D+  GR DA   D ++A E  
Sbjct: 132 KGKRVGVLQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQDEVAASE-- 189

Query: 186 EKTGLPLQLAGSPFETIENAWPFVNNEK-------------GQQLQGEVNKALAAMRADG 232
              G   Q  G  ++      P V +EK               +L+  +NKA A MRADG
Sbjct: 190 ---GFLKQPVGKDYKF---GGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADG 243

Query: 233 TLSQIALKWFGTDI 246
           T  ++A K+F  D+
Sbjct: 244 TYEKLAKKYFDFDV 257