Pairwise Alignments

Query, 223 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 229 a.a., Octopine transport system permease protein OccM from Azospirillum sp. SherDot2

 Score =  136 bits (342), Expect = 4e-37
 Identities = 82/222 (36%), Positives = 131/222 (59%), Gaps = 10/222 (4%)

Query: 4   DFHYMLELLPILLKYLGTTLEMASWGLVFALILALFLANIRVFKVPVLDPLSQLYISFFR 63
           ++  M + LP +L  L  TLE+    L    ++A  +A +R+    V++ L+  Y+  FR
Sbjct: 2   NWQLMWDSLPRMLGGLTLTLELIVGSLALGALVAFGVALLRLSGNRVVETLAAAYVFVFR 61

Query: 64  GTPLLVQLFLLYYGLPQ--------VFPLLVGLDAFSAAVIGLTLHFAAYMAESIRAAII 115
           GTPLLVQ+FL+YYGL Q        ++P L   + +  A++ LTL+  AY +E +R AI+
Sbjct: 62  GTPLLVQIFLVYYGLGQFEFIRDSILWPFL--REPYWCAILALTLNTGAYTSEVLRGAIL 119

Query: 116 GIDRSQMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMIKSTSLAFTLGVAEIM 175
            + + Q+EA+ + GM+ + A RRI+LP A R  LP+  N  I M+K+TSLA T+ + E+ 
Sbjct: 120 SVPQGQVEAARACGMSRALAFRRIVLPVAIRQMLPAYGNEVILMVKATSLASTITLMEVT 179

Query: 176 AKAQMEASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQKL 217
             A+   + +F  FE F+   +IY V+  + TRL  +AE +L
Sbjct: 180 GIARRMIAQTFAVFELFIVAGVIYLVLNFIATRLIKFAEWRL 221