Pairwise Alignments

Query, 453 a.a., tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE from Vibrio cholerae E7946 ATCC 55056

Subject, 490 a.a., putative GTP-binding factor (VIMSS) from Escherichia coli BW25113

 Score = 72.4 bits (176), Expect = 3e-17
 Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 18/206 (8%)

Query: 216 MKVVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR- 274
           +K+ I GRPN GKS+L N + G+E  +V D+ GTTRD +   +  DG    +IDTAG+R 
Sbjct: 203 IKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRK 262

Query: 275 --DASDAVEKIGIERAWEEIRQADRVLFMVDGTTTEATDPQDI-WPDFVDKLPENIGITV 331
               +DAVEK  + +  + I  A+ V+ ++D    E    QD+    F+  L     + +
Sbjct: 263 RGKITDAVEKFSVIKTLQAIEDANVVMLVID--AREGISDQDLSLLGFI--LNSGRSLVI 318

Query: 332 IRNKAD--------QTGEPLG--ICHVNQPTLIRLSAKTGQGVDALRQHLKECMGFSGNQ 381
           + NK D        Q  E L   +  ++   +  +SA  G GV  L + ++E    S  +
Sbjct: 319 VVNKWDGLSQEVKEQVKETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRR 378

Query: 382 EGGFMARRRHLDALERAAEHLAIGQQ 407
            G  M  R    A+E     L  G++
Sbjct: 379 VGTSMLTRIMTMAVEDHQPPLVRGRR 404



 Score = 65.9 bits (159), Expect = 3e-15
 Identities = 37/86 (43%), Positives = 46/86 (53%)

Query: 218 VVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS 277
           V + GRPN GKS+L N L+    A+V D  G TRD       I+G     IDT G+    
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAEIEGREFICIDTGGIDGTE 64

Query: 278 DAVEKIGIERAWEEIRQADRVLFMVD 303
           D VE    E++   I +AD VLFMVD
Sbjct: 65  DGVETRMAEQSLLAIEEADVVLFMVD 90