Pairwise Alignments

Query, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a ΔmexB

Subject, 520 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  289 bits (740), Expect = 2e-82
 Identities = 178/494 (36%), Positives = 268/494 (54%), Gaps = 14/494 (2%)

Query: 17  EQRLISTTDTRGTITYCNDAFVDISGYSEAELLGAAHNTVRHPDVPPAVFEHMWTTLKSG 76
           +  LISTT+TRG ITY N  F ++SGYS  EL+G  HN VRHPD+P A F+ MW  LKSG
Sbjct: 24  QDELISTTNTRGIITYVNQRFAEVSGYSADELIGHPHNKVRHPDMPSAAFKEMWEKLKSG 83

Query: 77  QPWMGIVKNRCKNGDHYWVNAYVTPVLENRQVVGFESVRIKPTAEQVRRAEALYTRLNKG 136
           Q W GIVKNRCKNGD YWV+A+V+P+ EN  +VG++SVR++P A  V +A A+Y RL   
Sbjct: 84  QSWRGIVKNRCKNGDFYWVDAFVSPIFENGTIVGYQSVRLQPQAAYVSKATAIYRRLLHN 143

Query: 137 KSAVPGRDKWLPVLQDWLPFILVSQLSFLIGVWLNSHWGFALAAALSVPLGLLGLSWQQR 196
           K  +P   K L ++Q      +V+    LI  +    WG+ +  A ++ +GL    +   
Sbjct: 144 K-PIP---KPLSLMQKRAVSAVVASTGLLIAGYF---WGWGVIIAGAILMGLNLAIFYDE 196

Query: 197 GTKRLLRLAEQTTSDPLIAQMYTDSRGPQARLEMSILSQEARMKTCLTRLQDTAEHLNSQ 256
             +   +L +  T    I++         + L+  ++  +A+M   L R QD A  L++ 
Sbjct: 197 AFRIPAKLIDMQTKYDSISRYIYAGADTSSILDFQLILLQAKMNGVLGRTQDQANQLHAI 256

Query: 257 ARQSNSLANASSIGLERQRVETEQVAAAINQMAATTQEVASHVNRAADATQQANELTRRG 316
           A Q       +   L++++ + EQ+A+A+ +M++T  EVA +  R + +   A EL  + 
Sbjct: 257 ADQLVVTTEQTYASLDQEKNQLEQLASAMEEMSSTITEVAQNTQRTSTSINTAYELCLKS 316

Query: 317 RDIAGETREAIQRLSTSVGETGLTVTRLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEA 376
                   + +++L+ SV +       L ++++ +   +  I  IA+QTNLLALNAAIEA
Sbjct: 317 SANMKANTQKVEQLAKSVADAANNANLLNQEAERVASAMGEIDSIAEQTNLLALNAAIEA 376

Query: 377 ARAGEMGRGFAVVADEVRQLAQRTAESTGQIHGLIAKLQQTATDAVHTMDTGRRQAEEGV 436
           ARAGE GRGFAVVADEVR L+ RT  ST  I   + K+          M+  R+ AE   
Sbjct: 377 ARAGEQGRGFAVVADEVRALSSRTQLSTNSISQSVDKMFSMLNAWAKEMEQSRQHAERCA 436

Query: 437 ARVLEADQALVGISEAVANITDMTTQIATATEEQSAVAEEINRNIATIASLADQTSDEAR 496
             +  + + +  I + V+ I     Q A A ++Q  V  EI  NI  I     Q+S E  
Sbjct: 437 NDIQTSAENVNTIYQEVSEIHTFAQQNAVAADQQRQVVHEITNNIHFIT----QSSSE-- 490

Query: 497 RSAVLSGELTDTAN 510
            +   + ++ D AN
Sbjct: 491 -NLAATHQIGDAAN 503