Pairwise Alignments

Query, 521 a.a., PAS from Pseudomonas syringae pv. syringae B728a ΔmexB

Subject, 524 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella sp. ANA-3

 Score =  374 bits (960), Expect = e-108
 Identities = 217/519 (41%), Positives = 306/519 (58%), Gaps = 2/519 (0%)

Query: 1   MRNNQPITQHERTFPAEQRLISTTDTRGTITYCNDAFVDISGYSEAELLGAAHNTVRHPD 60
           MR N P+TQ E  +PA+  L+STTDT+  ITY N +F  ++GY  + +LG  HN VRHPD
Sbjct: 1   MRKNLPVTQREYDYPADWILLSTTDTKSHITYANPSFCTVAGYELSGMLGLPHNMVRHPD 60

Query: 61  VPPAVFEHMWTTLKSGQPWMGIVKNRCKNGDHYWVNAYVTPVLENRQVVGFESVRIKPTA 120
           +PP  FE +W T++ G+PW GIVKNRC NGDHYWV+AYV+P++ N QV  F+SVR KP+ 
Sbjct: 61  MPPQAFEDLWKTIRKGEPWKGIVKNRCANGDHYWVDAYVSPIVVNGQVAEFQSVRTKPSR 120

Query: 121 EQVRRAEALYTRLNKGKSAVPGRDKWLPVLQDWLPFILVSQLSFLIGVWLNSHWGFALAA 180
           EQ+ RAEA Y  LNK    V    + L +       +LV+ L  L         GF +  
Sbjct: 121 EQINRAEAAYAELNKN-GQVKALKRTLEMPTKLALLVLVALLPMLYLALQIGVVGF-VGL 178

Query: 181 ALSVPLGLLGLSWQQRGTKRLLRLAEQTTSDPLIAQMYTDSRGPQARLEMSILSQEARMK 240
           A+S     +G +      + L+  A++   +PL+A +YT        +++++  Q + +K
Sbjct: 179 AISALALFIGGNLILGRYRTLVAKAKKIYDNPLMAHIYTGQSDDLGAIDLALQMQNSELK 238

Query: 241 TCLTRLQDTAEHLNSQARQSNSLANASSIGLERQRVETEQVAAAINQMAATTQEVASHVN 300
           + L R +D+ ++++ QA+ S +         + Q  E EQVA A+ QM AT  +++S+  
Sbjct: 239 SVLGRARDSCDNVSQQAKISAAKGEEIQGTSQSQLAEIEQVATAMQQMTATLGDMSSNCA 298

Query: 301 RAADATQQANELTRRGRDIAGETREAIQRLSTSVGETGLTVTRLAKDSDEIGGVVDVIKG 360
            AA A+Q A+  T  G      T ++IQ ++  + ET   +T L   S +IG V+DVI+G
Sbjct: 299 DAASASQMASLQTINGDKTVVSTIQSIQAMAQQLQETSQVITELEGHSRDIGRVLDVIQG 358

Query: 361 IADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQIHGLIAKLQQTATD 420
           IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LAQRT ++T +IH +I  LQQ    
Sbjct: 359 IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAQRTHDATKEIHTMINLLQQGTHK 418

Query: 421 AVHTMDTGRRQAEEGVARVLEADQALVGISEAVANITDMTTQIATATEEQSAVAEEINRN 480
           AV +M  G   A E +     A  AL  I EA+  ITDMT  IA+A EEQS+VA E+NR+
Sbjct: 419 AVRSMQEGVDAAGECITTADLAGAALRTIREAITTITDMTHHIASAVEEQSSVANEMNRS 478

Query: 481 IATIASLADQTSDEARRSAVLSGELTDTANSQYSLVERF 519
           +  ++     +         L+ E+    NS   LV +F
Sbjct: 479 VVNVSQFTHSSHQLGCEMVSLNDEVIGEMNSHTVLVGQF 517