Pairwise Alignments

Query, 329 a.a., L-arabinose ABC transporter membrane protein from Pseudomonas syringae pv. syringae B728a ΔmexB

Subject, 328 a.a., ribose ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score =  197 bits (501), Expect = 3e-55
 Identities = 110/293 (37%), Positives = 169/293 (57%), Gaps = 1/293 (0%)

Query: 34  LLAAVGIFLLCAVFIDNFMSPLNMRGLGLAISTVGIAACTMLFCLASGHFDLSVGSVLAC 93
           L   V + LL  +  DNF +  N   +   +S VGI A  M F + +G  DLSVG+ +A 
Sbjct: 33  LAGLVVVSLLMGLASDNFFTLSNWFNVLRQVSIVGILAVGMSFVILTGGIDLSVGAAMAL 92

Query: 94  SGVI-ASIVIRDTDSVFLGVSAALALGLVVGLINGIVIAKLRINALITTLATMQIVRGLA 152
           +G I A +++       L +   + L   +GL+NG ++A  R+ A+I TLATM + RG+ 
Sbjct: 93  AGTISAGLIVNSGLPAPLALLCGVGLATCIGLLNGALVAWGRMPAIIVTLATMGVARGVG 152

Query: 153 YIFSNGKAVGVSNEDFFIFGNGQVYGVPVPILITIACFIFFGWLLNYTTYGRNTMAIGGN 212
            I+S G  +         FG G++  VPVP+++ +  +     LL  T +GR+  AIGGN
Sbjct: 153 LIYSGGYPISGLPGWISWFGVGRIGMVPVPVILMLIVYALAWLLLQRTAFGRHVYAIGGN 212

Query: 213 QEAALLAGVHVDRTKIIIFAVHGLVGALAGVVLASRMTSGQPMIGQGFELTIISACVLGG 272
           + AA L+GV   R K+ ++A+ G    LA ++L  R+ SGQP  G GFEL  I+A VLGG
Sbjct: 213 EMAARLSGVKTTRIKLAVYAISGFTSGLAAIILTGRLMSGQPNAGVGFELDAIAAVVLGG 272

Query: 273 VSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFYQYVIRGTILLLAVIIDR 325
            +++GG G++   + G ++L I+ N +NL  I+ + Q +IRG I+LLA+ I R
Sbjct: 273 TAIAGGRGLVVGTLIGAVLLGILNNGLNLMGINPYLQDIIRGVIILLAIYIAR 325