Pairwise Alignments

Query, 322 a.a., Substrate-binding region of ABC-type glycine betaine transport system from Pseudomonas syringae pv. syringae B728a

Subject, 349 a.a., ABC transporter substrate-binding protein from Pseudomonas fluorescens SBW25

 Score = 54.7 bits (130), Expect = 3e-12
 Identities = 66/321 (20%), Positives = 119/321 (37%), Gaps = 57/321 (17%)

Query: 41  NWESAMLLTDVLQVILDKGYGCTVDALPGNSIAMENALGTND--IQIFAEEWV-GRSEVW 97
           NW  A+ +  +L  ++       V  L G+   + +A    D  + +  + W+  +S  W
Sbjct: 36  NWTGAIAIQHILGEVIKSRLDGDVSYLAGDVAVLFSAAAKGDGSVDVLTDIWLPNQSAAW 95

Query: 98  NKAAAAG--KVVGVGAPIVGAVEGWYVPRYVIEGDAKRKLEAKAPNLKSISDLAQYS-AV 154
            K    G   +V    P  G  +G+Y+P Y+ +             +KSI DL +   A 
Sbjct: 96  AKYVTGGTRSLVPNTHPYAGE-QGFYIPGYLQD----------KYGVKSIYDLKKPEVAK 144

Query: 155 FKDQEEPGKGRFYNCPAGWTCELENSEMLKSYGLESKYTNFRPGTGPALDAAILSSYKRG 214
             +    GK      PAGW          K YG   K+ +          A + S+YK  
Sbjct: 145 LFEPLGGGKAELLVGPAGWESTYIGQIKAKDYGFADKFESVSTEASVTY-AKLASAYKAQ 203

Query: 215 EPILTYYWSPTPLMGQVDLVRLEEKA----------------------GVNKTID----- 247
             ++ Y ++P  +    DL RLEE A                       ++ T+D     
Sbjct: 204 RGVVFYAYTPDWIFSAFDLRRLEEPAFDGYAQDNKKDDPLYKADGCWKFISPTVDPDWLN 263

Query: 248 ------------IKVGVSKVFHDEAPELVAILEKVNLPIDLLNQNLGRMAKERIESPKLA 295
                       + +  S      AP++   L  V +    LN+ + ++ KE+  +  +A
Sbjct: 264 KSQITCAFPDAKVHILASAALQKRAPKIAEFLRNVAIEPAQLNELILKIEKEKQPADVVA 323

Query: 296 KIFLKEHPEVWHKWVSEDAAK 316
           K +++ +     +W++  A K
Sbjct: 324 KAWVQVNSATVDQWLAASAPK 344