Pairwise Alignments

Query, 1229 a.a., YD repeat protein from Pseudomonas syringae pv. syringae B728a

Subject, 1428 a.a., RHS repeat-associated core domain-containing protein from Pseudomonas sp. SVBP6

 Score =  570 bits (1468), Expect = e-166
 Identities = 422/1300 (32%), Positives = 621/1300 (47%), Gaps = 154/1300 (11%)

Query: 14   TGAMAGFVLGAIVGIAAVAYVSLTVAT------C-GFGGFLLAMAV-------------- 52
            TG +  FVLGA+VGI     +S T A       C G G FL   +V              
Sbjct: 40   TGGLGCFVLGAVVGIVVGVAMSKTGADKGLSSLCEGIGNFLFPPSVQANILTGSKNTHTN 99

Query: 53   ----GLAGNAIASIGESIGSAFSSPAGQIESAS--------------PNVFINGRPAAFA 94
                  A   I +     GS  + P G+ E  S              P V         A
Sbjct: 100  GKPAARAAGVIVAAAAPAGSGAAQPPGEEEEESFLDMAKGFFSQMWRPTVASPAPNTEPA 159

Query: 95   IESTAVCDKHSPIVK--VAEGSSNVFINGQPAARKGDKLTCGAKIGTGSPNVFIGGGTQR 152
             +   +C KH P+    +AEGSS V ING PA R GD+ TC A      P  ++  G+ +
Sbjct: 160  DDDKILCSKHPPMPPQYLAEGSSKVTINGHPACRSGDRSTCEA---VXMPPQYLAEGSSK 216

Query: 153  YLPVDDEVSAMA--RYTVDILLVVAG---------GAKAVLSIAKLGMQAGLKAAGPCAL 201
             + ++   +  +  R T + ++V AG         G   V+   + G   G+  A    +
Sbjct: 217  -VTINGHPACRSGDRSTCEAVIVDAGLISDNVRIGGGSIVVREIRSGKTPGIGLAITALM 275

Query: 202  QFMGGVFLGDAIFRFG-------VAPVAEKVLGGLHG------NPVDTTTGRKLLI--DE 246
               G    G    +FG        + V  +V G +        NPV   TG K+L   +E
Sbjct: 276  MLRGRG--GKFYSKFGCMAIGGIASAVTSQVTGAITSAIAGSPNPVHVPTGAKILSGEEE 333

Query: 247  SDFSLPGLMPIEWTRFYAS-DLDVDSALGKGWVLPWE-----QSLRRKGSFLYLSDNQGR 300
             DFSLPGL+P++W R+Y + D   D   G GW + +E     ++    G  L  +D Q R
Sbjct: 334  LDFSLPGLIPLDWQRYYNNRDERRDGLFGAGWSVDYEVFVAIEAHPEGGERLLFTDEQAR 393

Query: 301  SVPFVTLDYNQRIYNAQEQLYLVRTEGGHYLLQTLDNVFYYFGEVPDDNHPVPLQRVENA 360
             V    +     +++A E L + R   G  L++++D ++  F   P D   + L ++ + 
Sbjct: 394  VVDMGNIPRGDAVFSAGEGLSVRRAHNGELLIESVDGLYRLFQPTPGDPQRLRLAQLGDR 453

Query: 361  LGHFLHFVRSEDGVLTDICATGGH-RVHLHYD-EVNSRLSTVKRIVGDQAVETLVRYGYD 418
              + ++      G L  +  T    +V L Y  +  +R+S ++R   D++ E LV Y YD
Sbjct: 454  NDNRIYLDYDTSGRLLRLRDTFDVVQVQLVYSSQWPARVSHIERWYSDESNELLVSYAYD 513

Query: 419  NNGQLNSVYNRNGDSVRNFSYTDGL-MTRHANALGLSCEYRW-EVLDGKPRVVEHWTSDG 476
            +NG L  V + +G   R F+Y  G  M  H    GL C Y W    DG  RV        
Sbjct: 514  SNGDLAEVRDASGQLQRRFAYDQGRRMVEHQLPSGLRCFYEWTRAADGLQRV------SS 567

Query: 477  EHFHFDYDFEARQTRITDVLGRRAEVTYNKDRRVIASTDFGGEQYRIALDNTGNITGLTL 536
             H++  Y      T+ TD LG      +N +R+++A+TD                     
Sbjct: 568  RHWNPQYQI----TQYTDALGHTWHFEWNDERQLLAATD--------------------- 602

Query: 537  PDGNQLGFEYDDLSRLTAETDPLGRT--TRYQHHYKTTLVKQITYPDGAVWTARYDSKGN 594
            P G Q  + YD+   L    DPLGR+  T++  H+    V+  T   G  W+ RYD +GN
Sbjct: 603  PQGGQWQYLYDESGNLCESIDPLGRSEATQWLEHWPLPRVQ--TDKAGKRWSYRYDQRGN 660

Query: 595  LVAEIDALGQKTEYLNSEDGLPHTIIDATYKSKYLWWNNLAQVERFQDCSGKSTWYRYDE 654
              +E D LG  T Y + E G    IIDA  K K+L WN L  +    DCSG  T + YD 
Sbjct: 661  CSSETDPLGHTTRYRHDERGQVVEIIDAAGKHKHLRWNELGLLIEQVDCSGYPTRFSYDR 720

Query: 655  RDQLVAVTDALNNTTTLERKPGGEVLSINHPDGTRESFTYNAHGQVLTHTNGKDQTTHLA 714
            R  L AVTDAL   T  +    G +L    PDG  + + ++ +GQ+ ++T+    TT   
Sbjct: 721  RGHLQAVTDALGERTEYQHDSKGRLLGSQLPDGRNQHYQHDRNGQLSSYTDPAGHTTQYR 780

Query: 715  RNARGLPIRRQDPKGLIVGYQYDKALRLAALINENDATYTFAYDDSDRLIEEKRIDQLTR 774
             N RG   +R DP G  V + YD   RL AL NEN  +Y F++D +DRL E++ +D    
Sbjct: 781  YNRRGQVHQRIDPHGRRVQFSYDAYGRLQALSNENGESYRFSWDLADRLAEQQDLDGSAS 840

Query: 775  RFSYNLGGHLTQVEEIGYSEKGERPQRSTHFERDPIGRLLARLNDDARQDFTYDDSDRLL 834
            R+ Y+   +L+ VE +  + +G          RD +GRL+ +  DD    ++YD  D+L 
Sbjct: 841  RYHYDRLDNLSCVEYLP-TPRGGAEVIIHQLHRDAVGRLIKKHTDDGETLYSYDPLDQLT 899

Query: 835  SIQRTPTDGGRKLGVTAEKLEFAYDILGRLTQESSPKGTLAYEYDPLSNLTTLTLPTGQH 894
            +I  T   G        E+L FAYD LG+L +E S  G L + YD L NL    LP G+ 
Sbjct: 900  AISFTDNAG------NTEQLAFAYDALGQLLEEHSASGVLQHHYDELGNLIQTQLPDGRW 953

Query: 895  LNHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGKLTSCFGYDALGRKTWQYATTL 954
            LN LYYGSGHLHQLNLDG++ISD ERD LHRE+ R+QG++++   YD  GR         
Sbjct: 954  LNRLYYGSGHLHQLNLDGKVISDFERDRLHREVLRSQGRISTRSEYDRCGR--------- 1004

Query: 955  PAEKLSQIQNPLIKPERYVEHAYNPLHRRYEYDPAGELSRTLDKLRG---EVTYEYEANG 1011
                   +++ L +P          + +R+++DPA  L    ++  G   +    Y+A+G
Sbjct: 1005 -------LRSRLRRPSHQPPQLPAQVQQRFDFDPADNLISRYNQQPGSQYQQLLHYDASG 1057

Query: 1012 RLLEHNPEKRFDGEEFRYDAAGNRLNFNTSRFDRVKDNRLKKWSNHEYKYDAWGNLVEKI 1071
            R++      +   E F YDAA N L+   +    V+ NR+  + +  Y+YD +G L+EK 
Sbjct: 1058 RIMASQDAGQGQSEAFAYDAAANLLDGPQAGIGLVRHNRVLTYQDKRYRYDGFGRLIEKR 1117

Query: 1072 VGIVRWQTFTYDSENRLVKTETMANSQVESTSSYQYDSLGRRVAK-QSDIKGK-TDHRLF 1129
                  Q F+YD+E+RL++  +  + + E   + +YD LGRR+ K + D +G   D   F
Sbjct: 1118 SSRRGIQHFSYDAEHRLIQVRSQ-HGRRERVLNMRYDPLGRRIEKSEHDDQGNLLDQTRF 1176

Query: 1130 LWQGLRLLREESPGQSSLYLYEPGSYAPLARVDEKEGEAEN-KVYYFHTDQIGTPLEMTD 1188
             W GLRLL+E    Q+SLYLY   S+ PLARVD   G  ++ +V Y+H D  G P ++TD
Sbjct: 1177 AWDGLRLLQEHRYSQTSLYLYVEDSHEPLARVD---GTGQHQQVRYYHNDLNGLPEQLTD 1233

Query: 1189 AEGQIVWQAKYRPWGAVEKLVVND---VEQNLRFQGQYME 1225
              G+ VW A+Y+ WG   + V       EQNLRFQGQY++
Sbjct: 1234 DSGEAVWLARYQVWGNTLQEVREAHFIEEQNLRFQGQYLD 1273



 Score = 43.1 bits (100), Expect = 2e-07
 Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 23/105 (21%)

Query: 13  HTGAMAGFVLGAI-------VGIAAVAYVS----LTVATCGFGGFLLAMAVGL------- 54
           HT  MA  V G +       +G+ A A V+    LTV T G G F+L   VG+       
Sbjct: 2   HTSMMADIVSGVLEVAANVAIGVLATAAVTAALGLTVVTGGLGCFVLGAVVGIVVGVAMS 61

Query: 55  ---AGNAIASIGESIGSAFSSPAGQ--IESASPNVFINGRPAAFA 94
              A   ++S+ E IG+    P+ Q  I + S N   NG+PAA A
Sbjct: 62  KTGADKGLSSLCEGIGNFLFPPSVQANILTGSKNTHTNGKPAARA 106