Pairwise Alignments

Query, 1229 a.a., YD repeat protein from Pseudomonas syringae pv. syringae B728a

Subject, 1616 a.a., type IV secretion protein Rhs from Escherichia coli ECRC98

 Score =  253 bits (647), Expect = 7e-71
 Identities = 292/1184 (24%), Positives = 468/1184 (39%), Gaps = 151/1184 (12%)

Query: 96   ESTAVCDKHSPIVKVAEGSSNVFINGQPAARKGDKLTCGAKIGTGSPNVFIGGGTQRYLP 155
            E TA+CDK +   ++A+GSSNVFIN QPAARKGDKL C A I  GSP+VFIGG    YL 
Sbjct: 254  EDTALCDKENKPPRIAQGSSNVFINNQPAARKGDKLECSAAIVEGSPDVFIGGEQVTYLD 313

Query: 156  VDDEVSAMARYTV------DILLVVAGGAKAVLSIAKLGMQAGLKAAGPCALQFMGGVFL 209
            +  E     R  +        LL  AG    + ++AKLG    L       L    G  L
Sbjct: 314  IQPEFPPWQRMILGGITIASYLLPPAGLLGKLGNLAKLGKLGNLLGKSGKLLGAKLGALL 373

Query: 210  GDAIFRFGVAPVAEKVLGGLHGNPVDTTTGRKLLIDESDFSLPGLMPIEWTRFYASDLDV 269
            G       +  +A KV+  +  +PVD  TG     + +DF+L   +P+ +TRF++S L +
Sbjct: 374  GKT--GNSLKSIANKVIRWV-TDPVDPVTG-AYCDERTDFTLGQTLPLSFTRFHSSVLPL 429

Query: 270  DSALGKGWVLPWEQS--LRRKGSFLYLSDNQGRSVPFVTLDYNQRIYNAQEQLYLVRTEG 327
                G GW   W +   +R +G+ + +  + G ++ F     +    N     Y++R   
Sbjct: 430  HGLTGVGWSDSWSEYAWVREQGNRVDVI-SLGATLNFAFDGESDTAVNPYHAQYILRRRD 488

Query: 328  GHYLLQTLDNVF--YYFGEVPDD--NHPVPLQRVENALGHFLHFVRSEDGVLTDICATGG 383
             +  L   D +   +++   P     HPV     ++ L H         G ++D   T  
Sbjct: 489  DYLELFDRDALSSRFFYDAFPGMRLRHPVTDDTSDDRLAHSPADRMYMLGGMSD---TAS 545

Query: 384  HRVHLHYDEVNSRLSTVKRIVGDQAVETL-VRYGYDNNGQLNSVYNR-NGDSVRNFSYTD 441
            +R+    D       T  RI G    + + ++  Y  +G L +++   NG         D
Sbjct: 546  NRITFERD-------TQYRITGVSHTDGIRLKLTYHASGYLKAIHRTDNGIQTLATYEQD 598

Query: 442  GLMTRHANALGLSCEYRWEVLDGKPRVVEHWTSDGEHFHFDYDFEARQTRITDVLG-RRA 500
              +  H     L  EY     D   R++    +D     F YD + R   +T   G   A
Sbjct: 599  ARLDYH-----LFYEY-----DAADRIIRWSDNDQTWSRFTYDAQGRCVTVTGAEGYYNA 648

Query: 501  EVTYNKDRRVIASTDFGGEQYRIALDNTGNITGLTLPDGNQLGFEYDDLSRLTAETDPLG 560
             + Y      +     G   +R   D  GNI     PDG+   +E+D+   L A   P G
Sbjct: 649  TLDYGDGCTTVTD---GKGIHRYYYDPDGNILREEAPDGSTTTYEWDEFHHLLARHSPAG 705

Query: 561  RTTRYQHHYKTTLVKQITYPDGAVWTARYDSKGNLVAEIDALGQKTEYLNSEDGLPHTII 620
            R  +++++     + + T  DGA W   YD +G L       GQ       E GLP +++
Sbjct: 706  RVEKFEYNAAHGQLSRYTAADGADWQYCYDERGLLSNITAPAGQTWTQQCDERGLPVSLV 765

Query: 621  DATYKSKYLWWNNLAQVERFQDCSGKSTWYRYDERDQLVAVTDALNNTTTLE-------- 672
                +   L +     +        +     YD  +    +TD +      E        
Sbjct: 766  SPQGEETRLAYTPQGLLSGIFRQDERRLGIEYDHHNWPETLTDVMGREHHTEYSGHDLPV 825

Query: 673  --RKPGGEVLSINHPD----------GT-RESFTYNAHGQVLTHTNGKDQTTHLARNARG 719
              R PGG+ + +              GT  E F Y+ HG +L +T+G      +      
Sbjct: 826  KMRGPGGQSVRLQWQQHHKLSGLERAGTGAEGFRYDRHGNLLAYTDGNGVVWTMEYGPFD 885

Query: 720  LPIRRQDPKGLIVGYQYDK-ALRLAALINENDATYTFAYDDSDRLIEEKRIDQLTRRFSY 778
            LP+ R D +G    Y+YDK  L+L  +IN    +Y +  D+  R+ EE+    +  R+ Y
Sbjct: 886  LPVARTDGEGHRWQYRYDKDTLQLTEVINPQGESYLYILDNCGRVTEERDWGGVVCRYRY 945

Query: 779  NLGGHLTQVEEIGYSEKGERPQRSTHFERDPIGRLLARLNDDARQDFTYDDSDRLLSIQR 838
            +  G  T         +    + +  + RD  GRL   +  + +  + YD S RL  I  
Sbjct: 946  DADGLCT--------ARVNGLEETILYSRDAAGRLAEVITPEGKTQYAYDKSGRLTGI-F 996

Query: 839  TPTDGGRKLGVTAEKLEFAYDILGRLTQESSPKGTLAYEYDPLSNLTTLTLPTGQH---- 894
            +P    ++ G         YD  GR+   +  +  + Y Y     +    LP        
Sbjct: 997  SPDGTSQRTG---------YDERGRVNVTTQGRRAIEYHYPDEHTVIRCILPPEDERDRH 1047

Query: 895  -------LNHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGKLTSC-FGYDALGRK 946
                     + Y  +G L ++ L G       RD+  RE+ R   +  +C  G++A G+ 
Sbjct: 1048 PDGSLLKTTYRYNAAGELTEVILPGDETLTFSRDEAGREVLRHSNRGFACEQGWNAAGQP 1107

Query: 947  TWQYATTLPAEKL-SQIQNPLIKPERY-----------VEHAYNPLHRRYEYDPAGELSR 994
              Q A   PAE     +   L++  RY            E      HR Y  D  G+++ 
Sbjct: 1108 VSQRAGLFPAEATWGGLLPSLLREYRYDSAGNVSGVTSREDYGRETHREYRLDRNGQVTA 1167

Query: 995  T------LDKLRGEVTYEYEANGRLLEHNPEK-RFDGEEFRYDAAGNRLNFNTSRFDRVK 1047
                   L    G+ TY Y++ G L   +  + R  GE  +Y AAG              
Sbjct: 1168 VTASGTGLGYGEGDETYGYDSCGYLKAQSAGRHRISGETDQY-AAG-------------- 1212

Query: 1048 DNRLKKWSNHEYKYDAWGNLVEKIVGIVRW----QTFTYDSENRLVKTETMANSQVESTS 1103
             +RLK+  N +Y YDA G +V +      +    + F +DS ++L    +    Q E   
Sbjct: 1213 -HRLKQAGNTQYDYDAAGRMVSRTKHRDGYRPETERFRWDSRDQLTGYRSAQGEQWE--- 1268

Query: 1104 SYQYDSLGRRVAKQSDIKGKTDHRLFLWQGLRLLREESPGQSSLYLYEPGSYAPLARVDE 1163
             Y++D+ GRR  K+ D   K     +LW G  +          LY      +     + +
Sbjct: 1269 -YRHDASGRRTEKRCD--RKKIRFTYLWDGDSIAEIREYRDDKLYSVRHLVFNGFELISQ 1325

Query: 1164 KEGEAE-----------NKVYYFHTDQIGTPLEMTDAEGQIVWQ 1196
            +                 +  +  +D  G PL + ++EG+ VW+
Sbjct: 1326 QFSRVRQPHPSVAPQWVTRTNHAVSDLTGRPLMLFNSEGKTVWR 1369



 Score = 49.7 bits (117), Expect = 2e-09
 Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 15/103 (14%)

Query: 4   AARLLDEIEH---TGAMAGFVLGAIVGIAAVAYVSLTVATCGFGGFLLAMAVGLAGNAIA 60
           AARL DEI+H    GA+AG VLGAIV IA      L +A C  G + L +   L   +  
Sbjct: 54  AARLGDEIQHKSFLGALAGAVLGAIVTIAEGC---LIMAACATGPYALVLVPALMYASYK 110

Query: 61  SIG---------ESIGSAFSSPAGQIESASPNVFINGRPAAFA 94
           +           ES  ++F    G I + S NV ING+PAA A
Sbjct: 111 ASDYVEEKQNQLESWINSFCDTDGAINTGSKNVKINGKPAARA 153