Pairwise Alignments
Query, 1229 a.a., YD repeat protein from Pseudomonas syringae pv. syringae B728a
Subject, 1398 a.a., RHS element protein from Escherichia coli ECRC102
Score = 243 bits (621), Expect = 6e-68
Identities = 244/853 (28%), Positives = 355/853 (41%), Gaps = 189/853 (22%)
Query: 412 LVRYGYDNNGQLNSVYNRNGDSVRNFSYT---DGLMTRHANALGLSCEYRWEVLDGKPRV 468
LVRY Y G+L +VY+R+ VR F+Y G M H A YR+ D RV
Sbjct: 318 LVRYTYTEAGELLAVYDRSNTQVRAFTYDAQHPGRMVGHRYAGRPEMRYRY---DDAGRV 374
Query: 469 VEHWTSDGEHFHFDYDFEARQTRITDVLGRR---------------------AEVT---Y 504
VE G +H+ Y E + +TD L RR VT Y
Sbjct: 375 VEQLNPAGLSYHYQY--EQDRITVTDSLNRREVLHTEGGAGLKRVVKKELADGSVTHSGY 432
Query: 505 NKDRRVIASTDFGGEQYRIALDN-TGNITGLTLPDGNQLGFEYDDLSRLTAETDPLGRTT 563
+ R+ A TD G + L+ +G+IT +T PDG + F Y+D ++LTA
Sbjct: 433 DAAGRLTAQTDAAGRRTEYGLNVVSGDITDITTPDGRETKFYYNDGNQLTA--------- 483
Query: 564 RYQHHYKTTLVKQITYPDGAVWTARYDSKGNLVAEIDALGQKTEYLNSE--DGLPHTIID 621
+ PDG YD G LV+E G+ Y + LP T D
Sbjct: 484 -------------VVSPDGLESRRAYDEPGRLVSETSRSGETVRYRYDDAYSELPATTTD 530
Query: 622 ATYKSKYLWWNNLAQVERFQDCSGKSTWY---------------------RYDERDQLVA 660
AT ++ + W+ Q+ F DCSG T Y RYD R +L++
Sbjct: 531 ATGSTRQMTWSRYGQLLAFTDCSGYQTRYEYDRFGQMTAVHREEGISLYRRYDNRGRLIS 590
Query: 661 VTDALNNTTTLERKPGGEVLSINHPDGTRESFTYNAHGQVLTHTNGKDQTTHLARNARGL 720
V DA + T E G++ ++ PDG R Y+A G+ ++ T G
Sbjct: 591 VKDAQGHETRYEYNAAGDLTAVITPDGNRSETQYDAWGKAVSTTQG-------------- 636
Query: 721 PIRRQDPKGLIVGYQYDKALRLAALINENDATYTFAYDDSDRLIEEKRIDQLTRRFSYNL 780
GL +YD A R+ L NEN + F YD DRL++++ D T+R+ Y+L
Sbjct: 637 --------GLTRSMEYDLAGRITTLTNENGSRSEFTYDALDRLVQQRGFDGRTQRYHYDL 688
Query: 781 GGHLTQVEEIGYSEKGERPQRSTHFERDPIGRLLAR-LNDDARQDFTYDDSDRLLSIQRT 839
G LTQ E+ G T + D RL R +N + + + YD+ L I
Sbjct: 689 TGKLTQSEDEGL---------VTLWHYDESDRLTHRTVNGEPAEQWQYDEHGWLTEISH- 738
Query: 840 PTDGGRKLGVTAEKLEFAYDILGRL-----TQESSPKGTL--------AYEYDPLSN-LT 885
G ++ V + YD GRL T + G L AY L+N +T
Sbjct: 739 -LSEGHQVAV-----HYGYDDKGRLAGERQTVHNPETGELLWQHETEHAYNEQGLANRVT 792
Query: 886 TLTLPTGQHLNHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGKLTSCFGYDALGR 945
+LP + L YGSG+L + L G + + RD LHRE R+ FG +A
Sbjct: 793 PDSLP---RVEWLTYGSGYLAGMKLGGTPLVEFTRDRLHRETVRS-------FGNNA--- 839
Query: 946 KTWQYATTLPAEKLSQIQNPLIKPERYVEHAYNPLHRRYEYDPAGELSRTLDKLRGEVTY 1005
Y T +Q+ + + Y R Y+++ G+L R + R Y
Sbjct: 840 ----YELTSTYTPAGHLQSQRLNSQVY--------DRDYDWNDNGDLVR-ISGPRQTREY 886
Query: 1006 EYEANGRL-----LEHNPEKRFDGEEFRYDAAGNRLN----FNTSRFDRVKDNRLKKWSN 1056
Y A GRL L + + R + D AGNRL S DNR+ + ++
Sbjct: 887 GYSATGRLESVRTLASDLDIRI---PYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAH 943
Query: 1057 HEYKYDAWGNLVEKI----VGIVRWQT-----FTYDSENRLVKTETMANSQVESTSSYQY 1107
+ Y++D +G L EK G++R + YDS++RLV + + + S Y Y
Sbjct: 944 YVYRHDEYGRLTEKTDRIPAGVIRTDDERTHHYHYDSQHRLVFYTRIQHGEPLVESRYLY 1003
Query: 1108 DSLGRRVAKQ-----SDIKG------KTDHRLFLWQGLRLLREESPGQSSLYLYEPGSYA 1156
D LGRR K+ D+ G K + + W G RL ++ +YEPGS+A
Sbjct: 1004 DPLGRRTGKRVWRRGRDLTGWMSLSRKPEVTWYGWDGDRLTTVQTDTTRIQTVYEPGSFA 1063
Query: 1157 PLARVDEKEGEAE 1169
PL R++ GE E
Sbjct: 1064 PLIRIETDNGERE 1076
Score = 64.3 bits (155), Expect = 7e-14
Identities = 51/154 (33%), Positives = 73/154 (47%), Gaps = 9/154 (5%)
Query: 202 QFMGGVFLGDAIFRFGVAP-VAEKVLGG--LHGNPVDTTTGRKLLIDESDFSLPGLMPIE 258
Q+ G + G A R G VA V G GNPV+ G K+L E+D +LPG +P
Sbjct: 14 QYGGPIVQGSAGVRIGAPTGVACSVCPGGMTSGNPVNPLLGAKVLPGETDLALPGPLPFI 73
Query: 259 WTRFYASDLDVDSA----LGKGWVLPWEQSLRRKGSFLYLSDNQGRSVPFVTLDYNQRIY 314
+R Y+S A G GW P + L+ + L L+DN GRS+ F L + +Y
Sbjct: 74 LSRTYSSYRTRTPAPVGIFGPGWKAPSDIRLQLRDDALVLNDNGGRSIHFEPLLPGEAVY 133
Query: 315 NAQEQLYLVRTEGGHYLLQTLDNVFYYFGEVPDD 348
+ E ++LVR GG + +G +P D
Sbjct: 134 SRSESMWLVR--GGKAAQPDGHTLARLWGALPPD 165
Score = 39.7 bits (91), Expect = 2e-06
Identities = 48/202 (23%), Positives = 83/202 (41%), Gaps = 35/202 (17%)
Query: 357 VENALGHFLHFVRSEDGVLTDICATGGHRVHLHYDEVNSRLSTVKRIVGDQAVETLVRYG 416
V++A GH + + G LT + G+R YD +ST + + +++E
Sbjct: 591 VKDAQGHETRYEYNAAGDLTAVITPDGNRSETQYDAWGKAVSTTQGGL-TRSME------ 643
Query: 417 YDNNGQLNSVYNRNGDSVRNFSYTDGLMTRHANALGLSCEYRWEVLDGKPRVVEHWTSDG 476
YD G++ ++ N NG E+ ++ LD R+V+ DG
Sbjct: 644 YDLAGRITTLTNENGS---------------------RSEFTYDALD---RLVQQRGFDG 679
Query: 477 EHFHFDYDFEARQTRITDVLGRRAEVTYNKDRRVIASTDFGGEQYRIALDNTGNITGLT- 535
+ YD + T+ D G Y++ R+ T G + D G +T ++
Sbjct: 680 RTQRYHYDLTGKLTQSEDE-GLVTLWHYDESDRLTHRTVNGEPAEQWQYDEHGWLTEISH 738
Query: 536 LPDGNQLG--FEYDDLSRLTAE 555
L +G+Q+ + YDD RL E
Sbjct: 739 LSEGHQVAVHYGYDDKGRLAGE 760
Score = 29.6 bits (65), Expect = 0.002
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 119 INGQPAARKGDKLTCGAKIGTGSPNVFIGGGT 150
++G+PAAR+GD G I GS V IG T
Sbjct: 1 MSGKPAARQGDMTQYGGPIVQGSAGVRIGAPT 32