Pairwise Alignments
Query, 1229 a.a., YD repeat protein from Pseudomonas syringae pv. syringae B728a
Subject, 1411 a.a., rhs element protein RhsB from Escherichia coli ECOR27
Score = 237 bits (604), Expect = 6e-66
Identities = 239/827 (28%), Positives = 339/827 (40%), Gaps = 143/827 (17%)
Query: 412 LVRYGYDNNGQLNSVYNRNGDSVRNFSYTD---GLMTRHANALGLSCEYRWEVLDGKPRV 468
LVRYG+ G+L VY+R+G VR+F+Y D G M H + YR+ D RV
Sbjct: 311 LVRYGWTPRGELAVVYDRSGKQVRSFTYDDKYRGRMVAHRHTGRPEIRYRY---DSDGRV 367
Query: 469 VEHWTSDGEHFHFDYDFEARQTRITDVLGRRAEVTYNKD----RRVIASTDFGGEQYRIA 524
E G + Y +E ITD L RR EV + + +RV+ G +
Sbjct: 368 TEQLNPAG--LSYTYQYEKDHITITDSLDRR-EVLHTQGEAGLKRVVKKEHADGSVTQSQ 424
Query: 525 LDNTGNITGLTLPDGNQLGFEYDDLSRL-TAETDPLGRTTR--YQHHYKTTLVKQITYPD 581
D G + T G + D ++ L T T P GR + Y HH + T T PD
Sbjct: 425 FDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASAFYYNHHSQLT---SATGPD 481
Query: 582 GAVWTARYDSKGNLVAEIDALGQKTEYL--NSEDGLPHTIIDATYKSKYLWWNNLAQVER 639
G +YD G L+ E G T Y N LP DAT K + W+ Q+
Sbjct: 482 GLEMRRKYDEYGRLIQETAPDGDITRYRYDNPHSDLPCATDDATGSRKTMTWSRYGQLLS 541
Query: 640 FQDCSGKSTWY---------------------RYDERDQLVAVTDALNNTTTLERKPGGE 678
F DCSG T Y YD R QL+AV D + T E G+
Sbjct: 542 FTDCSGYVTRYDHDRFGQVTAVHREEGLSQYRAYDSRGQLIAVKDTQGHETRYEYNIAGD 601
Query: 679 VLSINHPDGTRESFTYNAHGQVLTHTNGKDQTTHLARNARGLPIRRQDPKGLIVGYQYDK 738
+ ++ PDG+R Y+A G+ + T G GL +YD
Sbjct: 602 LTTVIAPDGSRNGTQYDAWGKAICTTQG----------------------GLTRSMEYDA 639
Query: 739 ALRLAALINENDATYTFAYDDSDRLIEEKRIDQLTRRFSYNLGGHLTQVEEIGYSEKGER 798
A R+ L +EN + TF YD DRLI+E D T+R+ ++L G L + E+ G
Sbjct: 640 AGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGL------ 693
Query: 799 PQRSTHFERDPIGRLLAR-LNDDARQDFTYDDSDRLLSIQRTPTDGGRKLGVTAEKLEFA 857
TH+ D RL R +N + + + YD+ L I ++G R VT + +
Sbjct: 694 ---VTHWHYDEADRLTHRTVNGETAEQWQYDERGWLTDISHI-SEGHR---VT---VHYG 743
Query: 858 YDILGRLTQESS-----PKGTLAYEYDP-----LSNLTTLTLPTG-QHLNHLYYGSGHLH 906
YD GRLT E L ++++ L +P + L YGSG L
Sbjct: 744 YDEKGRLTGERQTVHHPQTEALLWQHETRHAYNAQGLANRCIPDSLPAVEWLTYGSGWLS 803
Query: 907 QLNLDGQLISDMERDDLHREIYRTQGKLTSCFGYDALGRKTWQYATTLPAEKLSQIQNPL 966
+ L + + RD LHRE R+ G+ Y G+ Q+ +L ++
Sbjct: 804 GMKLGDTPLVEYTRDRLHRETLRSFGRYELTTAYTPAGQLQSQHLNSLLSD--------- 854
Query: 967 IKPERYVEHAYNPLHRRYEYDPAGELSRTLDKLRGEVTYEYEANGRLL-EHNPEKRFDGE 1025
R Y ++ GEL R + R +Y Y GRL H D
Sbjct: 855 ---------------RDYTWNDNGELIR-ISSPRQTRSYSYSTTGRLTGVHTTAANLDIR 898
Query: 1026 -EFRYDAAGNRLN----FNTSRFDRVKDNRLKKWSNHEYKYDAWGNLVEKI----VGIV- 1075
+ D AGNRL S DNR+ + +++ Y+YD G L EK G++
Sbjct: 899 IPYATDPAGNRLPDPELHPDSTLSMWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIR 958
Query: 1076 ----RWQTFTYDSENRLVKTETMANSQVESTSSYQYDSLGRRVAK-----QSDIKG---- 1122
R + YDS++RLV ++ S Y YD LGRRVAK + D+ G
Sbjct: 959 TDDERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSL 1018
Query: 1123 --KTDHRLFLWQGLRLLREESPGQSSLYLYEPGSYAPLARVDEKEGE 1167
K + W G RL ++ +Y+PGS+ PL RV+ GE
Sbjct: 1019 SRKPQVTWYGWDGDRLTTIQNDRSRIQTIYQPGSFTPLIRVETATGE 1065
Score = 63.9 bits (154), Expect = 9e-14
Identities = 48/130 (36%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 202 QFMGGVFLGDAIFRFGVAP-VAEKVLGG--LHGNPVDTTTGRKLLIDESDFSLPGLMPIE 258
Q+ G + G A R G VA V G G+PV+ G K+L E+D +LPG +P
Sbjct: 14 QYGGSIVQGSAGVRIGAPTGVACSVCPGGVTSGHPVNPLLGAKVLPGETDIALPGPLPFI 73
Query: 259 WTRFYASDLDVDSA----LGKGWVLPWEQSLRRKGSFLYLSDNQGRSVPFVTLDYNQRIY 314
+R Y+S A LG GW +P + L+ + + L LSDN GRS+ F L + Y
Sbjct: 74 LSRTYSSYRTKTPAPVGSLGPGWKMPADIRLQLRDNTLILSDNGGRSLYFEHLFPGEDGY 133
Query: 315 NAQEQLYLVR 324
+ E L+LVR
Sbjct: 134 SRSESLWLVR 143
Score = 41.6 bits (96), Expect = 5e-07
Identities = 104/491 (21%), Positives = 183/491 (37%), Gaps = 102/491 (20%)
Query: 357 VENALGHFLHFVRSEDGVLTDICATGGHRVHLHYDEVNSRLSTVKRIVGDQAVETLVRYG 416
V++ GH + + G LT + A G R YD + T +
Sbjct: 584 VKDTQGHETRYEYNIAGDLTTVIAPDGSRNGTQYDAWGKAICTTQ--------------- 628
Query: 417 YDNNGQLNSVYNRNGDSVRNFSY-TDGLMTRHANALGLSCEYRWEVLDGKPRVVEHWTSD 475
G R+ Y G + R + G +R++VLD R+++ D
Sbjct: 629 --------------GGLTRSMEYDAAGRVIRLTSENGSHTTFRYDVLD---RLIQETGFD 671
Query: 476 GEHFHFDYDFEARQTRITDVLGRRAEVTYNKDRRVIASTDFGGEQYRIALDNTGNITGLT 535
G + +D + R D G Y++ R+ T G + D G +T ++
Sbjct: 672 GRTQRYHHDLTGKLIRSEDE-GLVTHWHYDEADRLTHRTVNGETAEQWQYDERGWLTDIS 730
Query: 536 -LPDGNQ--LGFEYDDLSRLTAETDPLGRTTRYQHHYKTTLVKQITYPDGAVWTARYDSK 592
+ +G++ + + YD+ RLT E + HH +T + +W +++++
Sbjct: 731 HISEGHRVTVHYGYDEKGRLTGERQTV-------HHPQT---------EALLW--QHETR 772
Query: 593 GNLVAEIDALGQKTEYLNSEDGLPHTIIDATYKSKYLWWNNLAQ---VERFQDCSGKSTW 649
+A G + D LP + TY S +L L VE +D + T
Sbjct: 773 ----HAYNAQGLANRCI--PDSLP-AVEWLTYGSGWLSGMKLGDTPLVEYTRDRLHRETL 825
Query: 650 YRYDERDQLVAVTDALN------NTTTLER----KPGGEVLSINHPDGTRESFTYNAHGQ 699
+ + A T A N+ +R GE++ I+ P TR S++Y+ G+
Sbjct: 826 RSFGRYELTTAYTPAGQLQSQHLNSLLSDRDYTWNDNGELIRISSPRQTR-SYSYSTTGR 884
Query: 700 VL-THTNGKDQTTHL--ARNARG--LPIRRQDPKGLIVGYQYDKALRLAALINENDATYT 754
+ HT + + A + G LP P + + ++ R DA Y
Sbjct: 885 LTGVHTTAANLDIRIPYATDPAGNRLPDPELHPDSTLSMWPDNRIAR--------DAHYL 936
Query: 755 FAYDDSDRLIEEKRI---------DQLTRRFSYNLGGHLTQVEEIGYSEKGERPQRSTHF 805
+ YD RL E+ + D+ T R+ Y+ L Y+E P + +
Sbjct: 937 YRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYAE----PLVESRY 992
Query: 806 ERDPIGRLLAR 816
DP+GR +A+
Sbjct: 993 LYDPLGRRVAK 1003
Score = 30.0 bits (66), Expect = 0.001
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 119 INGQPAARKGDKLTCGAKIGTGSPNVFIGGGT 150
++G+PAAR+GD G I GS V IG T
Sbjct: 1 MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPT 32