Pairwise Alignments

Query, 511 a.a., RNA polymerase, sigma 54 subunit, RpoN/SigL from Pseudomonas syringae pv. syringae B728a

Subject, 497 a.a., RNA polymerase factor sigma-54 from Pseudomonas simiae WCS417

 Score =  951 bits (2459), Expect = 0.0
 Identities = 478/497 (96%), Positives = 492/497 (98%)

Query: 15  MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDHSD 74
           MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFD++D
Sbjct: 1   MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNAD 60

Query: 75  PLADNIEQKPNPDVQEPTYQESAPTVDNLEEGEWNERIPNELPVDTAWEDIYQTSASSLP 134
           PLADNIEQKPN DVQEP+YQE+APTVDNLEEG+WNERIPNELPVDTAWED+YQTSASSLP
Sbjct: 61  PLADNIEQKPNSDVQEPSYQETAPTVDNLEEGDWNERIPNELPVDTAWEDVYQTSASSLP 120

Query: 135 SNDDDEWDFTTRTSVGESLQSHLLWQLNVAPMSDKDRLVAVTLIDCINNQGYLDETLDEI 194
           SNDDDEWDFTTRTSVGESLQSHLLWQLN+APMSD DRL+AVTLIDCINNQGYLDETL+EI
Sbjct: 121 SNDDDEWDFTTRTSVGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEEI 180

Query: 195 LESFDPELDIELDEIEAVLHRIQQFEPAGIGARNLSECLLLQLRQLPAKTPWLTEAQRLV 254
           LE+FDPELDIELDEIEAVLHRIQQFEPAGIGAR LSECLLLQLRQLPAKT WLTEAQRLV
Sbjct: 181 LEAFDPELDIELDEIEAVLHRIQQFEPAGIGARTLSECLLLQLRQLPAKTAWLTEAQRLV 240

Query: 255 SDYIDLLGSRDYGQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVIPDVIVRK 314
           +DYIDLLGSRDY QLMRRMKLKED+LRQVIELVQSLNPRPGSQIES+EAEYV+PDVIVRK
Sbjct: 241 TDYIDLLGSRDYSQLMRRMKLKEDDLRQVIELVQSLNPRPGSQIESSEAEYVVPDVIVRK 300

Query: 315 DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL 374
           DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
Sbjct: 301 DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL 360

Query: 375 MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK 434
           MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
Sbjct: 361 MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK 420

Query: 435 YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK 494
           YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
Sbjct: 421 YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK 480

Query: 495 YRESLGIAPSSERKRLM 511
           YRESLGIAPSSERKRLM
Sbjct: 481 YRESLGIAPSSERKRLM 497