Pairwise Alignments

Query, 486 a.a., RND efflux system, outer membrane lipoprotein, NodT from Pseudomonas syringae pv. syringae B728a

Subject, 475 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

 Score =  443 bits (1140), Expect = e-129
 Identities = 248/476 (52%), Positives = 319/476 (67%), Gaps = 9/476 (1%)

Query: 1   MSKSLISLAVTA-FILGGCSLIPDYKQPQAPVAAQYPQGPAYSPVEGAKMAAAEQGWRHF 59
           M+K LI  A+ A  +L GCSLIP Y++P APV   +P  PA    + A  AAA   W+ F
Sbjct: 1   MTKKLIPTALAAAMLLAGCSLIPTYERPAAPVPTTFPGDPA----QPAGQAAANLAWQDF 56

Query: 60  FNDPALQQLIQTALLNNRDLRVAALNIDAYRAQYRIQRSDLFPAVSATGSGSRQRV-PGD 118
           F DP L  LIQTAL NNRDLRV+ LNI+  RAQ++IQRS LFPA+  TG+GSR    P  
Sbjct: 57  FTDPRLAGLIQTALANNRDLRVSVLNIEQARAQFQIQRSALFPALGVTGTGSRSGPNPYQ 116

Query: 119 QSQTGQPGITSSYSATLGVSSYELDLFGRVRSLSEQALETYFASEEARRSTQISLVASVA 178
             + G   + S YS   G +++ELD FGR+R+L +QAL  Y A++E R++ QISL+ASVA
Sbjct: 117 GIEPGMGSVASQYSVNFGFTAWELDFFGRIRALKDQALAQYLATDETRKAVQISLIASVA 176

Query: 179 NAYMTWQADKELLKLTQDTLKTYEESFRLTSRASEVGVSSALDLSQSRTAVESARAKLAQ 238
           N ++T  AD ELL++T+ T+ T EES RLT    + GVSS LD   +    ESARA  AQ
Sbjct: 177 NGWLTLLADDELLEITRQTMVTREESVRLTKLRFDNGVSSELDYQAANGQFESARAAYAQ 236

Query: 239 YQRLVAQDQNSLVLLLGTSLPDNLPASH---LLDSDMLTEMPAGLPSDLLQRRPDILEAE 295
             R  A+D+N+L LLLG  +P    A     L     + ++PAGLPSDLL  RPDI  AE
Sbjct: 237 QLRARAEDENALALLLGAPVPAEATAGGAKGLNGIKPMPDVPAGLPSDLLAERPDIRSAE 296

Query: 296 HSLKAANANIGAARAAFFPSISLTASAGTSSSELSGLFKGGSGAWLFQPSINIPIFNAGN 355
             L AANANIGAARA FFP +SLT+S GT+S+E SGLF  GS AW F P++ +PIFNAG+
Sbjct: 297 QQLIAANANIGAARANFFPRVSLTSSIGTASTEFSGLFDRGSKAWSFAPTVTLPIFNAGS 356

Query: 356 LRASLDYSKIQKEISVANYEKAIQTAFQEVSDGLASRKTYDEQLQAQRDFVAANQDYYRL 415
            RA+L+ +K  +EI+VA YEK+IQTAF+EV+D LA R T  EQ++A R    +    ++L
Sbjct: 357 NRATLESAKAGREIAVAQYEKSIQTAFREVADALAGRATLGEQVRALRAQADSEAVRFKL 416

Query: 416 AERRYRIGIDSNLTFLDAQRSLFSAQQTLITDRLSQLTSEVNLYKALGGGWYERTG 471
           ++ RYR GI S L  LDAQRSLF+AQQ+ +T +L QL ++V LYK LGGGW  R G
Sbjct: 417 SDLRYRNGIASALDLLDAQRSLFAAQQSAVTTQLLQLQNQVTLYKTLGGGWATRDG 472