Pairwise Alignments

Query, 486 a.a., RND efflux system, outer membrane lipoprotein, NodT from Pseudomonas syringae pv. syringae B728a

Subject, 484 a.a., efflux transporter outer membrane subunit from Serratia liquefaciens MT49

 Score =  392 bits (1006), Expect = e-113
 Identities = 214/468 (45%), Positives = 308/468 (65%), Gaps = 6/468 (1%)

Query: 1   MSKSLISLAVTAFILGGCSLIPDYKQPQAPVAAQYPQGPAYSPVEGA-KMAAAEQGWRHF 59
           M + LI+L     + G  SL PDY++PQAPV +  PQG AY+   G   ++  +  WR +
Sbjct: 1   MLQRLITLTFPLVLAGCISLDPDYQRPQAPVPSTLPQGAAYTAPSGKLSLSYPDIPWRDY 60

Query: 60  FNDPALQQLIQTALLNNRDLRVAALNIDAYRAQYRIQRSDLFPAVSATGSGSRQR-VPGD 118
             D  L+Q+++  L ++RDLR A  NI++ RA Y  QR+DLFP ++A   GSR R + G+
Sbjct: 61  VVDSRLRQVVEMGLSSSRDLREAIANIESARALYGEQRADLFPTINAGVDGSRGRALTGN 120

Query: 119 QSQTGQPGITSSYSATLGVSSYELDLFGRVRSLSEQALETYFASEEARRSTQISLVASVA 178
            + T    I+ SY AT   SS+ELDLFG+ RSL+    E+Y A  EA +ST+++L+A   
Sbjct: 121 GNATA---ISQSYEATASTSSFELDLFGKNRSLTRAKFESYLAESEAAKSTRLALIADTV 177

Query: 179 NAYMTWQADKELLKLTQDTLKTYEESFRLTSRASEVGVSSALDLSQSRTAVESARAKLAQ 238
             ++   A +  L   + T+++ ++S  +T +  + G+ S +D++ + T  + AR+ +A 
Sbjct: 178 TDWVNVAAARSNLAAAKGTMESAKQSLAVTRKNQQNGILSMVDVASAETVYQQARSDVAS 237

Query: 239 YQRLVAQDQNSLVLLLGTSLPDNL-PASHLLDSDMLTEMPAGLPSDLLQRRPDILEAEHS 297
           Y    AQ +N+L L++G S+P++L P      S ++ ++PA + S +L  RPD+LEAEH+
Sbjct: 238 YTTSAAQAKNALDLVVGQSVPESLLPDGIEALSGIMKDIPANVSSQVLLNRPDVLEAEHN 297

Query: 298 LKAANANIGAARAAFFPSISLTASAGTSSSELSGLFKGGSGAWLFQPSINIPIFNAGNLR 357
           LKAANANIG+ARAAFFPSISLTAS G  S ELS LF  G+G W F PSI++PIF  G   
Sbjct: 298 LKAANANIGSARAAFFPSISLTASGGVGSGELSSLFSQGAGVWSFAPSISLPIFTGGYNM 357

Query: 358 ASLDYSKIQKEISVANYEKAIQTAFQEVSDGLASRKTYDEQLQAQRDFVAANQDYYRLAE 417
           A L+Y+K QK++ VA YEKA+QTAFQE +D LA + T  EQL AQ  +VAA+Q+YYRLAE
Sbjct: 358 AQLNYTKAQKDLYVATYEKAVQTAFQETADALARKGTIQEQLAAQTGYVAASQEYYRLAE 417

Query: 418 RRYRIGIDSNLTFLDAQRSLFSAQQTLITDRLSQLTSEVNLYKALGGG 465
            RYR G+D+ L  LDAQR+L++AQQ+LI  R ++  + + LYK LGGG
Sbjct: 418 LRYRHGVDTYLVMLDAQRTLYTAQQSLIAARQTEYQNLITLYKVLGGG 465