Pairwise Alignments

Query, 386 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

Subject, 397 a.a., multidrug efflux RND transporter periplasmic adaptor subunit AcrA from Escherichia coli ECRC100

 Score =  391 bits (1004), Expect = e-113
 Identities = 206/376 (54%), Positives = 268/376 (71%), Gaps = 17/376 (4%)

Query: 3   FKPAVTVLVTAIALATLLSGCSKKEQAAPPAQTPQVGVVTIKAQPYTLTTELPGRTTAFR 62
           F P   VL+ + +LA  L+GC  K+      Q P VGVVT+K +P  +TTELPGRT+A+R
Sbjct: 7   FTPLAVVLMLSGSLA--LTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRTSAYR 64

Query: 63  VAEVRPQVNGIILKRLFTEGGDVKAGQQLYQIDPAVYEANANSAKATLQSAKSMSD---- 118
           +AEVRPQV+GIILKR F EG D++AG  LYQIDPA Y+A  +SAK  L  A++ ++    
Sbjct: 65  IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQL 124

Query: 119 ---RYKQLVSEQAVSRQEYDTALASTQEA-------QAALQTAQINLRYTKVLAPISGRI 168
              RY++L+  Q +S+QEYD ALA  Q+A       +AA++TA+INL YTKV +PISGRI
Sbjct: 125 TVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRI 184

Query: 169 GRSAVTEGALVSSAQTDAMATIQQLDPIYVDVVQSSADMLKLRSDLDSGKLQKAGDNAAK 228
           G+S VTEGALV + Q  A+AT+QQLDPIYVDV QSS D L+L+ +L +G L K  +  AK
Sbjct: 185 GKSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTL-KQENGKAK 243

Query: 229 VKLTLEDNSVYAQEGKLEFSEVSVDQTTGSVTLRAVFPNPEHRLLPGMFVHAQLQAGVNS 288
           V L   D   + Q+G LEFS+V+VDQTTGS+TLRA+FPNP+H LLPGMFV A+L+ G+N 
Sbjct: 244 VSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNP 303

Query: 289 KAILAPQQGVTRDLKGTPTAMVVNQDNKVEMRTLVANRTVGSDWLIEDGLKEGDRVITEG 348
            AIL PQQGVTR  +G  T +VV  D+KVE R +VA++ +G  WL+ +GLK GDRV+  G
Sbjct: 304 NAILVPQQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISG 363

Query: 349 LQYVKPGAEVKVAEAT 364
           LQ V+PG +VK  E T
Sbjct: 364 LQKVRPGVQVKAQEVT 379