Pairwise Alignments

Query, 714 a.a., Helicase c2 from Pseudomonas syringae pv. syringae B728a

Subject, 686 a.a., ATP-dependent DNA helicase from Variovorax sp. OAS795

 Score =  192 bits (488), Expect = 5e-53
 Identities = 205/727 (28%), Positives = 313/727 (43%), Gaps = 119/727 (16%)

Query: 20  AKSLKPRYGQRLMIAEVAKVLGDIDTDEEGRRSGDPAVVAVEAGTGTGKTVAYAIASIPT 79
           A+  + R GQ  M   VA+ +      E+G       V+ VEAGTG GKT +Y + ++  
Sbjct: 23  AEQFRERSGQTEMALAVARTI------EKG------GVLVVEAGTGVGKTFSYLVPAL-- 68

Query: 80  AKAAGKRLVIATATVALQEQIVYKDLPDLMRNSGLNFTFALAKGRGRYMCLSKLDALLQE 139
              +G+R++++TAT  LQ+Q+  +DLP L+    L    AL KGR  Y+CL +LD    +
Sbjct: 69  --LSGERVLLSTATKTLQDQLFGRDLPRLVEALELPVRTALLKGRASYLCLHRLDLARHD 126

Query: 140 SDATNATAQLFEEEGFKI--EVDEASQKLFTSMLQKLAGNKWDGDRDSWPQELADQDWAR 197
                  A L E    +   ++++ S+   T  L +L G     D  S    L       
Sbjct: 127 -------ASLPERGSLRTLAKIEQWSKATRTGDLAELPGL----DERSPLIPL------- 168

Query: 198 LTTDHSQCTNRHCPNFQQCAFYKAREGMGKVDVIVTNHDMVLADLAL---GGGAVLPDPR 254
           +T+    C    CP F+ C    AR      DV+V NH +  ADLA+   G   +LP   
Sbjct: 169 ITSTRENCLGAQCPQFKPCHVNLARREALAADVVVINHHLFFADLAVRETGMAELLPTV- 227

Query: 255 DTLYVFDEGHHLPDKAIGHFAHYTRLKSTADWLEQTAKNLAKLLAQHPLP-GDLGKLIEQ 313
            ++ VFDE H L +  +             D+    A+++     QH     D  +L+  
Sbjct: 228 -SVVVFDEAHQLNETGVQFLGAQLGSGQALDF----ARDMLGAGLQHARGLVDWQQLVAG 282

Query: 314 VPELAREIKGHQQFMFGACEQLADFRAGEDMQGRERPRHRFVGGVIPEHIREMGIELKKG 373
           V   ARE++                  G+   G +    R+VG   P+     G++    
Sbjct: 283 VERAARELR---------------LAVGKQWPGTKL---RWVGPA-PD-----GVDPDLW 318

Query: 374 FARLDDLFTRLTELLKEGMDGEVNIGIASHQAEEWYPLFGSLLARAHGNWELWTAFTAED 433
              LD L  +  EL  +G+D             E  P F  L  RA    +    F    
Sbjct: 319 QGSLDAL-QQAFELAADGLD----------TVSEISPDFVRLYERAQQLAKRAARFALPC 367

Query: 434 PEDSPPMARWLTLADSGAMFDIEVNASPILAAEMLRRNLWNI------AYGA-------- 479
             +S    RW+ +        + +  SP+  AE +R  +  I      AYG         
Sbjct: 368 ELES---VRWVDVGTQ-----LRLVESPLDIAEAMRTRVLKIDSDRQDAYGEEMDGRAGP 419

Query: 480 -------LVTSATLTALGKFDRYRMRAGLPKGAVTAVVPSPFHHADAGVLRVPDLKADPR 532
                  + TSATL        +    GL    V  V  SPF +A    L VP     P 
Sbjct: 420 EDSGRAWVFTSATLGDEPTLRWFTEPCGLGDAEVLRV-QSPFDYAAQAGLYVPRAFPKPN 478

Query: 533 DSVAHTAAIIRDLPGLVEGSRGTLVLYSSRK-------QMQDVFDGLDRDWRKQVFIQGN 585
           D+   T        G  E    TLVL ++ +       +M+  F+ L+ D R +V +QG 
Sbjct: 479 DAAHSTRVAQLAARGAAELGGRTLVLTTTLRALRTIGDEMKQQFERLEADMRPEVLVQGE 538

Query: 586 LSKQETLNKHKARVDSGESS-VLFGLASFAEGVDLPGAYCEHVVIAKIPFAVPDDPVEAA 644
           L K+  +++ +    +G +  VL   ASF EG D PG   + VVI K+PF  P+DP+  A
Sbjct: 539 LPKRVLMDRFREGAAAGRAGCVLVASASFWEGFDAPGDALQLVVIDKLPFPPPNDPLVEA 598

Query: 645 LAEWIEARGGNPFMEIAVPDASLRLVQACGRLLRTEEDRGTITLLDRRVVTQRYGKAILN 704
            ++ +EA+G + F + ++P+A++ L Q  GRL+R E D G + + D R+V   YG+ +  
Sbjct: 599 RSQRLEAQGRSSFSDYSLPEAAVALKQGAGRLIRRETDCGVLAICDTRLVAMGYGRRLFA 658

Query: 705 ALPPFRR 711
           ALPP RR
Sbjct: 659 ALPPMRR 665