Pairwise Alignments

Query, 714 a.a., Helicase c2 from Pseudomonas syringae pv. syringae B728a

Subject, 636 a.a., putative ATP-dependent DNA helicase YoaA from Escherichia fergusonii Becca

 Score =  204 bits (518), Expect = 1e-56
 Identities = 195/699 (27%), Positives = 308/699 (44%), Gaps = 109/699 (15%)

Query: 24  KPRYGQRLMIAEVAKVLGDIDTDEEGRRSGDPAVVAVEAGTGTGKTVAYAIASIPTAKAA 83
           KPR  QR M   V + +            G P VV  EAGTGTGKT AY    +  A  A
Sbjct: 19  KPREPQRQMAVAVTQAI----------EKGQPLVV--EAGTGTGKTYAY----LAPALRA 62

Query: 84  GKRLVIATATVALQEQIVYKDLPDLMRNSGLNFTFALAKGRGRYMCLSKLDALLQESDAT 143
            K+++I+T + ALQ+Q+  +DLP + +        AL KGR  Y+CL +L+   Q++ A 
Sbjct: 63  KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE---QQALA- 118

Query: 144 NATAQLFEEEGFKIEVDEASQKLFTSMLQKLAGNKWDGDRDSWPQELAD-QDWARLTTDH 202
                     G  + V   S  +   +L+  +    DGD  +      D Q W  +T+ +
Sbjct: 119 ----------GGDLPVQILSDVI---LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTN 165

Query: 203 SQCTNRHCPNFQQCAFYKAREGMGKVDVIVTNHDMVLADLAL---GGGAVLPDPRDTLYV 259
             C    CP ++ C   KAR+     DV+V NH + LAD+ +   G G ++P+    + +
Sbjct: 166 DNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEA--DVMI 223

Query: 260 FDEGHHLPDKAIGHFAHYTRLKSTADWLEQTAKNLAKLLAQHPLPGDLGKLIEQVPELAR 319
           FDE H LPD A  +F      +   D     AK++   +A      D  +L +    LA+
Sbjct: 224 FDEAHQLPDIASQYFGQSLSSRQLLD----LAKDIT--IAYRTELKDTQQLQKCADRLAQ 277

Query: 320 EIKGHQQFMFGACEQLADFRA--GEDMQGRERPRHRFVGGVIPEHIREM--GIELKKGFA 375
             +              DFR   GE       P +R        ++RE+    ++++ F 
Sbjct: 278 SAQ--------------DFRLQLGE-------PGYR-------GNLRELLANPQIQRAFL 309

Query: 376 RLDDLFTRLTELLKEGMDGEVNIGIASHQAEEWYPLFGSLLARAHGNWELWTAFTAEDPE 435
            LDD      ++ K  +     +  A  +A  +      L       +  W   T+    
Sbjct: 310 LLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTS---- 365

Query: 436 DSPPMARWLTLADSGAMFDIEVNASPILAAEMLRRNLWNIAYGALVTSATLTALGKFDRY 495
                 R  TLA            +P+  A+  +  +       + TSATL+       +
Sbjct: 366 ------RHFTLA-----------LTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHF 408

Query: 496 RMRAGLPKGAVTAVVPSPFHHADAGVLRVPDL--KADPRDSVAHTAAIIRDLPGLVEGSR 553
             R G+   A + ++PSPF ++   +L VP    + +   S    AA++R +   +E + 
Sbjct: 409 TSRLGIEL-AESLLLPSPFDYSRQALLCVPRNLPQTNQPGSARQLAAMLRPI---IEANN 464

Query: 554 GT-LVLYSSRKQMQDVFDGLDRDWRKQVFIQGNLSKQETLNKHKARVDSGESSVLFGLAS 612
           G   +L +S   M+D+ +         V +QG  SK + L +      S  +++L   +S
Sbjct: 465 GRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV----SAGNALLVATSS 520

Query: 613 FAEGVDLPGAYCEHVVIAKIPFAVPDDPVEAALAEWIEARGGNPFMEIAVPDASLRLVQA 672
           F EGVD+ G     V+I K+PF  PDDP+  A  E    RGG+PF E+ +PDA + L Q 
Sbjct: 521 FWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQG 580

Query: 673 CGRLLRTEEDRGTITLLDRRVVTQRYGKAILNALPPFRR 711
            GRL+R  +DRG + + D R+V + YG   L +LPP  R
Sbjct: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPR 619