Pairwise Alignments

Query, 686 a.a., Flagellar basal body rod protein:Protein of unknown function DUF1078 from Pseudomonas syringae pv. syringae B728a

Subject, 687 a.a., flagellar hook-associated protein FlgK from Pseudomonas sp. S08-1

 Score =  523 bits (1348), Expect = e-153
 Identities = 295/705 (41%), Positives = 431/705 (61%), Gaps = 44/705 (6%)

Query: 3   LISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTLS 62
           L+SIGLSG++A+  ++   G+N  NV+T G+SRQ   T  + +I    G GYIG+GTTL 
Sbjct: 4   LLSIGLSGLSANKTSLAVTGHNITNVNTPGFSRQD--TVQATRIPQFSGAGYIGSGTTLV 61

Query: 63  DVRRIYNSYLDTQLQSSTALSADALAYSGQASKTDTLLSDSATGISVQLADFFTKMQGIA 122
           DVRRIYN +L TQ+++STAL++D  AY  Q ++ D+LL+ S TG++  L   F  +Q  A
Sbjct: 62  DVRRIYNEFLTTQVRTSTALNSDVSAYLDQINQLDSLLAGSTTGVTPGLQKLFASLQTAA 121

Query: 123 TSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKKVNELTTTLASLNK 182
                   R   L++A  L+ RFN++  +L  QN  +N QL+  T +VN+L T++A  N 
Sbjct: 122 EDPANIPARQLVLSEAEGLAKRFNTIYDRLYEQNAFINKQLEAVTDQVNQLATSIAGYNN 181

Query: 183 QITQASAGNATPNTLLDSRSEAVRQLNELVGVKVV-ENNGNFDIYTGTGQSLVSGGTSYK 241
            I  A+A    PN LLD+R EAVR+L+E +GV VV +++ +++++ G+GQ LV G T+ +
Sbjct: 182 AIAVAAANGQAPNDLLDAREEAVRKLSEFIGVTVVPQDDSSYNLFIGSGQPLVVGATASR 241

Query: 242 MSASPSPSDPLQYNVQIAYGQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGRTAMVL 301
           +   P  SDPL+  +Q   G ++  +TS++TGG +GGL+RYR +VL  + N +GR A+ +
Sbjct: 242 LEVVPGQSDPLRAEIQFVSGNSRQGITSLITGGEMGGLIRYREDVLDESLNAVGRLAISI 301

Query: 302 SDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNVTIGDTSKLT 361
           +DQVNSQ+ QG+D KGNFG  L+ +IN    I QRSI +  NS  + NLNV I D++ LT
Sbjct: 302 ADQVNSQLGQGLDLKGNFGEPLFRAINDPLLIGQRSIARVGNSDTTANLNVLIEDSTALT 361

Query: 362 ANDYEVTFSDSSNFSVRRLPNGESVGS------------------GSLADNPPKQFEGFS 403
            +DYE+ F+ ++ ++VRR+ +G++V +                    +    P  F+GFS
Sbjct: 362 TSDYEIEFTSATEYTVRRVSDGQTVSALYDDDGDPDTPLVAAPSPYDITSGTPLVFDGFS 421

Query: 404 VSLNGNTLAAGDSFKVIPTRTGASGISVALTDAKDIAAAAPLTATAGSSNSGTGGFTQPV 463
           +++   T AAGD F+V+PTRT  S I   L +A+++A A+PL A     N GTG  TQP 
Sbjct: 422 MNVASGTFAAGDRFRVMPTRTAGSDIRADLKNAQELAFASPLKAETSPGNIGTGVITQPS 481

Query: 464 VNTKSDIYDSTQTADLRNALKDSTPMKLVMGAVNSSGVQSYTVIKANGGAVLDQNGNAIG 523
           + T  DIYD    A L N+L+ + P+++V     +SG   Y V+    GAVL  N     
Sbjct: 482 LTTTIDIYDPVAQAALENSLRTTPPLRIVF----TSGT-DYDVVDTT-GAVLSSN----- 530

Query: 524 GSIIQGQANTVKLNVGYTDTTTTPNSKTAFELQMTISGSPVANDTFSIGLTGGGSSDNRN 583
            +I+ GQ NT ++  G     T PN    F  + TISG P   D F+I     G SDNRN
Sbjct: 531 -TIVPGQNNTQQITAG-----TPPND---FTFEFTISGRPSTGDNFTIAFNTNGVSDNRN 581

Query: 584 ALAVVGLQTAKTVGV---INGGVGTSLSGSYASTVSVVGTLASQSKNDVTATAAVVSQAK 640
           AL +  LQ   T+G+     G  GTS + SY   V  VGTL SQ++ D  AT A++ QA 
Sbjct: 582 ALKLADLQNKATIGIDPNFPGTTGTSFTDSYGDLVERVGTLTSQARVDGEATGAILKQAT 641

Query: 641 SSRDSVSGVSLDEEASNLIKYQQYYTASSQIIKAAQTIFSTLINS 685
            +RDSVS V+LDEEA+ LI+++QYY AS+QII+ A+++F TLIN+
Sbjct: 642 DNRDSVSAVNLDEEAAKLIQFEQYYQASAQIIQVARSLFDTLINT 686