Pairwise Alignments

Query, 686 a.a., Flagellar basal body rod protein:Protein of unknown function DUF1078 from Pseudomonas syringae pv. syringae B728a

Subject, 547 a.a., Flagellar hook-associated protein 1 from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  228 bits (582), Expect = 4e-64
 Identities = 149/462 (32%), Positives = 252/462 (54%), Gaps = 21/462 (4%)

Query: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61
           SLI+  +SG+NA+ AA+NT  NN ++ + AGY+RQ  +  A A   LG G G++G G  +
Sbjct: 3   SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIM-AQANSTLGAG-GWVGNGVYV 60

Query: 62  SDVRRIYNSYLDTQLQSSTALSADALAYSGQASKTDTLLSDSATGISVQLADFFTKMQGI 121
           S V+R Y++++  QL+++   S+   A   Q SK D +LS S + ++ Q+ DFFT +Q +
Sbjct: 61  SGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTL 120

Query: 122 ATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKKVNELTTTLASLN 181
            ++A   A R + + ++  L  +F +    L  Q+  VN  +     ++N     +ASLN
Sbjct: 121 VSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLN 180

Query: 182 KQITQAS--AGNATPNTLLDSRSEAVRQLNELVGVKV-VENNGNFDIYTGTGQSLVSGGT 238
            QI++ +     A+PN LLD R + V +LN++VGV+V V++ G ++I    G SLV G T
Sbjct: 181 DQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGST 240

Query: 239 SYKMSASPSPSDPLQYNVQIAYGQTQTDV---TSVLTGGSIGGLLRYRNEVLVPATNELG 295
           + +++A PS +DP +  V    G T  ++     +L  GS+GG+L +R++ L    N LG
Sbjct: 241 ARQLAAVPSSADPSRTTVAYVDG-TAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLG 299

Query: 296 RTAMVLSDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNVTIG 355
           + A+  ++  NSQ   G D+ G+ G + +       AI + ++ + T + G+  +  T+ 
Sbjct: 300 QLALAFAEAFNSQHKAGFDANGDEGEDFF-------AIGKPAVLQNTKNNGNVAIGATVT 352

Query: 356 DTSKLTANDYEVTFSDSSNFSVRRLPNGESVGSGSLADNPPKQFEGFSVSLNGNTLAAGD 415
           D S + A DY+++F D++ + V RL +  +      A N    F+G  ++  G T A  D
Sbjct: 353 DASVVLATDYKISF-DNNQWQVTRLASNTTFTVTPDA-NGKVAFDGLELTFTG-TPAVND 409

Query: 416 SFKVIPTRTGASGISVALTDAKDIAAAAPLTATAGSSNSGTG 457
           SF + P       + V +TD   IA A+     AG S++  G
Sbjct: 410 SFTLKPVSDAIVNMDVLITDEAKIAMAS--EEDAGDSDNRNG 449



 Score = 95.9 bits (237), Expect = 4e-24
 Identities = 112/443 (25%), Positives = 180/443 (40%), Gaps = 89/443 (20%)

Query: 292 NELGRTAMVLSDQ---VNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSG 348
           N+   T   L DQ   VN  +   +D   N+   + S  +    +T    G + N++   
Sbjct: 142 NQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLNDQISRLTGVGAGASPNNL-LD 200

Query: 349 NLNVTIGDTSKLTANDYEVTFSDSSNFSVRRLPNGESVGSGSLADNPPKQFEGFSVSLNG 408
             +  + + +++     EV+  D   +++  + NG S+  GS A                
Sbjct: 201 QRDQLVSELNQIVG--VEVSVQDGGTYNIT-MANGYSLVQGSTA---------------- 241

Query: 409 NTLAAGDSFKVIPTRTGASGISVALTDAKDIAAAAPLTATAGSSNSGTGGFTQPVVNTKS 468
             LAA      +P+    S  +VA  D      A  +       N+G+ G    ++  +S
Sbjct: 242 RQLAA------VPSSADPSRTTVAYVDG----TAGNIEIPEKLLNTGSLG---GILTFRS 288

Query: 469 DIYDSTQTA----DLRNALKDSTPMKLVMGAVNSSGVQSYTVIKANGGAVLDQNGN-AIG 523
              D T+       L  A   ++  K    A    G   + + K         NGN AIG
Sbjct: 289 QDLDQTRNTLGQLALAFAEAFNSQHKAGFDANGDEGEDFFAIGKPAVLQNTKNNGNVAIG 348

Query: 524 GSII-----------------QGQANTVKLNVGYTDTTTTPNSKTAFE-LQMTISGSPVA 565
            ++                  Q Q   +  N  +T  T   N K AF+ L++T +G+P  
Sbjct: 349 ATVTDASVVLATDYKISFDNNQWQVTRLASNTTFT-VTPDANGKVAFDGLELTFTGTPAV 407

Query: 566 NDTFSIGLTG-----------------------GGSSDNRNALAVVGLQT-AKTVGVING 601
           ND+F++                            G SDNRN  A++ LQ+ +KTVG    
Sbjct: 408 NDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQALLDLQSNSKTVGGAK- 466

Query: 602 GVGTSLSGSYASTVSVVGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLIKY 661
               S + +YAS VS +G   +  K   T    VV+Q  + + S+SGV+LDEE  NL ++
Sbjct: 467 ----SFNDAYASLVSDIGNKTATLKTSSTTQGNVVTQLSNQQQSISGVNLDEEYGNLQRF 522

Query: 662 QQYYTASSQIIKAAQTIFSTLIN 684
           QQYY A++Q+++ A  IF  LIN
Sbjct: 523 QQYYLANAQVLQTANAIFDALIN 545