Pairwise Alignments

Query, 540 a.a., Rhs element Vgr protein from Pseudomonas syringae pv. syringae B728a

Subject, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score = 89.4 bits (220), Expect = 5e-22
 Identities = 108/482 (22%), Positives = 181/482 (37%), Gaps = 70/482 (14%)

Query: 19  DLHIINFAGHEALNETYRFDLWMIGSHPQLDVRSLLHREAFLSFGESGGGR---HGRIEH 75
           +  +++F   E LN+ +  +L ++     +D   +L + A  +   +       HG +  
Sbjct: 18  EFEVVSFKLDETLNQPFVLNLELVSYESDIDFGHVLDKPALFTLYSADRPLRHVHGLVSA 77

Query: 76  AARLHRGNRVSLYHLILVPDLQRLAQHRQRRAYQDRAIPQLIVRLLEAHGIGTNAYRFE- 134
            ++   G   + YH ++ P L R       R +Q + +PQ++  + +  GI     RFE 
Sbjct: 78  FSQGETGFCRTRYHAVVEPQLARARLRSNWRIFQQKTVPQILELMFKRQGIT----RFEL 133

Query: 135 HVNGLYPARPLHIQYDESDLHLLQRLCEEEGMHFRFEHRRSGHRLVFSDDPASF------ 188
             +  +  R   +Q  E+DL  + RL  EEG  +RFEH    H L+ +D   SF      
Sbjct: 134 KSSAQHQVREFCVQAGETDLDFIHRLAAEEGFVYRFEHCARQHTLIVTDRLLSFGLLSRG 193

Query: 189 ---------------PAQPLPVRFKRPQASDVPRETL--LHLAERLGFPQFSRQPADHPQ 231
                             P  V +      D  R  L  L   E++   +  ++      
Sbjct: 194 ALKAEDDEALWLDEDDVGPDKVLYHASSGGDQARACLRRLRYCEQVRTARQVQRDYTFTN 253

Query: 232 PAHAPSSPHDAHPLTIAA--NHAFQPPGLRGAISPREALSRQRGSRGLERLRCERSDVRG 289
           PA+          +T  +     F  PG       R+A+ +      L  LR +      
Sbjct: 254 PAYRQEHKAQTSGVTHQSLDYERFDYPGR----YKRDAVGKPFTETRLTALRHDACLAEV 309

Query: 290 QSIDTALQCGEVIQVLDHPEPLLNDQWLLTEVVHAGRQLQVLKGAAAHDALAILRILVEA 349
           Q  D  LQ G    ++ HP   LN  W +  + H G QL  L+  AA             
Sbjct: 310 QGDDVRLQTGLSFTLVGHPREDLNVHWRVISLCHEGTQLTSLQEEAA------------- 356

Query: 350 QRSSPEAEQLQGNGYCNNFRVIPWATPFRPSISHPRPIVTGEHFATLQRNDNQP---DPP 406
                 AE  QG  Y N+  ++     +RP+    +P + G H AT+     +    D  
Sbjct: 357 -----GAE--QGTRYVNDALLVQGMAEWRPA-PMAKPRIDGPHMATVVGPPGEEIYCDEW 408

Query: 407 GYRSIRFDWHAQGPEDE-------PAQRWPVARVACPEIHRLPAGTRVRVRYLDNHPERP 459
           G   + F W  +   +E        +Q W         I R+  G  V V+Y++  P++P
Sbjct: 409 GRVKVSFPWDRESKNNEFSSCWVWVSQGWAGGSWGSMAIPRI--GQDVIVQYVNGDPDQP 466

Query: 460 VI 461
           +I
Sbjct: 467 MI 468