Pairwise Alignments

Query, 540 a.a., Rhs element Vgr protein from Pseudomonas syringae pv. syringae B728a

Subject, 722 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score = 86.3 bits (212), Expect = 4e-21
 Identities = 108/483 (22%), Positives = 179/483 (37%), Gaps = 77/483 (15%)

Query: 22  IINFAGHEALNETYRFDLWMIGSHPQLDVRSLLHREAFLSFGESGGGR-----HGRIEHA 76
           +++F   E ++  +  +L +I     +D   LL +    +  +  G R     HG +   
Sbjct: 22  VVSFELREGISAPFELELKLISFENDIDFGHLLDKPVLFTILD--GERPVRYVHGLVSSF 79

Query: 77  ARLHRGNRVSLYHLILVPDLQRLAQHRQRRAYQDRAIPQLIVRLLEAHGIGTNAYRFEHV 136
           ++   G   + YH ++ P L R       R +Q + +PQ++  +L+  GI     R    
Sbjct: 80  SQGESGFYRTYYHALVEPQLARARLRSNWRIFQHKTVPQILELMLKRQGIDQYELR---A 136

Query: 137 NGLYPARPLHIQYDESDLHLLQRLCEEEGMHFRFEHRRSGHRLVFSDDPASF-------- 188
           +  +  R   +Q  E+DL  + RL  EEG  +RF H    H+L+ +D   S         
Sbjct: 137 SMDHQVREFCVQAGETDLAFIARLAAEEGFVYRFAHSEKLHKLIITDRLQSLGLISHGAI 196

Query: 189 --------------PAQPLPVRFKRPQASD--VPRETLLHLAERLGFPQFSRQPADHPQP 232
                         P  P  V ++     D  +P    L  +E++   +  ++      P
Sbjct: 197 KADHEDEGFGDDDEPVGPDSVLYQANSGGDQAIPCLRRLRYSEQVRTARQVQRDHTFTHP 256

Query: 233 A----HAPSSPHDAHPLTIAANHAFQPPGLRGAISPREALSRQRGSRGLERLRCERSDVR 288
           A    H  + P   H         F  PG       R+A+ +      +  LR +     
Sbjct: 257 AYRQEHRAAGPFLEH--QSKDYEYFDYPGR----YKRDAVGKPFTENRITALRHDVRIAE 310

Query: 289 GQSIDTALQCGEVIQVLDHPEPLLNDQWLLTEVVHAGRQLQVLKGAAAHDALAILRILVE 348
            Q  D  LQ G    + DHP   LN  W ++ V H G Q   L+  AA            
Sbjct: 311 VQGDDVRLQPGLSFTLTDHPREDLNVHWRVSTVHHEGSQPTSLQEEAAGAD--------- 361

Query: 349 AQRSSPEAEQLQGNGYCNNFRVIPWATPFRPSISHPRPIVTGEHFATLQRNDNQP---DP 405
                      QG  Y     ++P  T +RP+   P+P V G H AT+     +    D 
Sbjct: 362 -----------QGTRYEQKAVLVPGRTEWRPA-PLPKPRVDGPHMATVVGPPGEEIYCDE 409

Query: 406 PGYRSIRFDWHAQGPEDE-------PAQRWPVARVACPEIHRLPAGTRVRVRYLDNHPER 458
            G   + F W  +   +E        +Q W         I R+  G  V + Y++  P++
Sbjct: 410 WGRVKVSFPWDRESQNNEFSSCWLRVSQGWAGGSWGSMAIPRI--GQDVIIHYVNGDPDQ 467

Query: 459 PVI 461
           P+I
Sbjct: 468 PMI 470