Pairwise Alignments

Query, 319 a.a., Phage integrase:Phage integrase, N-terminal SAM-like protein from Pseudomonas syringae pv. syringae B728a

Subject, 319 a.a., site-specific integrase from Pseudomonas sp. SVBP6

 Score =  410 bits (1053), Expect = e-119
 Identities = 189/297 (63%), Positives = 245/297 (82%)

Query: 1   MNDVDRYIEAATRDNTRRSYRAAIEHFEVTWGGFLPATSESVARYLASHAGTLSVNTLKL 60
           MN ++RY++AA RDNTRRSY+AA+EHFEV+WGGFLPAT++S+ARYLA HA + S++TLK 
Sbjct: 1   MNTIERYLQAAVRDNTRRSYQAAVEHFEVSWGGFLPATADSIARYLADHAQSHSISTLKQ 60

Query: 61  RLSALAQWHVSQGFVDPTKAPMVRKVIKGIRALHPAQEKQAEPLQLQDLEKVIAWLEIEI 120
           RL+AL QWHVSQGF DPTKAP+VR+++KGIR LHPA+ +QA PL +Q L+  +A LE E 
Sbjct: 61  RLAALGQWHVSQGFPDPTKAPLVRQMLKGIRTLHPAEPRQAAPLLIQHLQTAVAVLEGEA 120

Query: 121 HEAKAQHDQPRLLRGRRDSALILLGFWRGFRSDELCRLQIQDVKAIADSGISLYLPRSKG 180
            +A+A+HD P LLR  RD AL+L+GFWRGFR DEL RLQ++ ++A A  G++++LPRSKG
Sbjct: 121 TQARARHDLPALLRASRDKALLLIGFWRGFRGDELARLQVEHIQAQAGVGMTIFLPRSKG 180

Query: 181 DRDNLGRTYQTPALQRLCPVQAYIEWINCAALVRGPVFRAVDRWGNLSEEGLHANSVIPL 240
           DR  LG  ++ PAL+ LCPVQAY++WI  A +  GPVFR +DRWGNL E+ L++NS+I L
Sbjct: 181 DRQALGVRHRAPALKVLCPVQAYLQWIEVAGIAHGPVFRKLDRWGNLGEQALNSNSLIAL 240

Query: 241 LRQALQRAGIAAEHYTSHSLRRGFASWAHSNGWDLKSLMSYVGWRDIKSAMRYIDAA 297
           LR+ L+RAG+ A  YT HSLRRGFA+WA SNGW+LK+LMSYVGW+D KSA+RYIDA+
Sbjct: 241 LRRILERAGVPAALYTGHSLRRGFATWASSNGWELKALMSYVGWKDAKSALRYIDAS 297