Pairwise Alignments

Query, 465 a.a., RND efflux system, outer membrane lipoprotein, NodT from Pseudomonas syringae pv. syringae B728a

Subject, 480 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  236 bits (601), Expect = 2e-66
 Identities = 155/463 (33%), Positives = 251/463 (54%), Gaps = 16/463 (3%)

Query: 12  LVMALAAC-AVGPDYQAPVTAPAKLAS-----AAQGNYDRSK-VDRVWWQQFEDPTLNKL 64
           L + L+AC  VGPDY  P  A           A +GN   S  V   WW+ ++DP L++L
Sbjct: 10  LGLLLSACQVVGPDYSLPDKAAINRGDLQGHIAGEGNNVVSAPVPADWWKLYKDPRLDEL 69

Query: 65  VARSLDGNRDLRVAFARLKSARAIRDDVANDVMPVVTSRASSDIGKGQQPG----ITERR 120
           V +++  N DLRVA A L+ AR       +     + ++A +   + Q+ G    + ++ 
Sbjct: 70  VRQAMASNTDLRVAAANLQRARYQTQQAESAGGWSLGAKAEAQ--RLQESGEAFLLADKV 127

Query: 121 VNSERYDLGLDMAWEVDLFGRIQRQLEASDADQDAAEANLYQLQVTLIAEVVDAYGQLRG 180
                  +G+  +++ DLFG +QR +E++ A  DAA+A     ++TL+A+VV +Y Q+  
Sbjct: 128 PVGNIGSVGITTSYQFDLFGTLQRGIESAQASADAAQAAADIARITLVADVVRSYTQVCA 187

Query: 181 AQLREAIARDNLKNQQSSQDVTTQLRDAGVGNELDVVRAEARLAAVEASVPQLQAEQARQ 240
           A    AIA ++L  Q  S  +T +LRDAG G+E  V R++ +  ++ A +P+ +A +   
Sbjct: 188 ANEELAIANESLDLQAQSTQLTQRLRDAGRGDETQVTRSQTQYKSLRADMPRYEALRQAG 247

Query: 241 RNRIATLLGERPENLSVDLSP-SKLPAIAKALPIGDPTQVLRNRPDIRAAERQLAASTAR 299
             R++ LL +  + L       ++LP IA+ LP+GD   +L+ RPD+R AERQLAA+TAR
Sbjct: 248 LFRLSMLLAKPVDQLPAGTGTCAELPHIAQLLPVGDGATLLKRRPDVRQAERQLAAATAR 307

Query: 300 IGVATADLFPRVSLSGFLGFTAGRGSQIGSSAARAWSLGPSITWAAFDLGSVRAQIRSAD 359
           IGVAT  L+P +S+   +G T G    +G  A   W  GP I+W     G+ RA++  A+
Sbjct: 308 IGVATGALYPDISIGATVG-TVGLLDNLGQPATNRWGFGPMISWTVPTNGA-RARVHEAE 365

Query: 360 ADAEGALANYEQQVLLALEESENAFSDYDKRQQRLVSLMRQSDASRSAARLASVQYREGT 419
           A  +GALA+++  VL A+ E++   + Y  + QR  +L    ++++ AA      ++ G 
Sbjct: 366 AATQGALAHFDGVVLNAIRETQTGLAQYTAQLQRRDALAEAGESAKEAAGQTHRFFQAGR 425

Query: 420 ADFLVLLDAERERLAAEDAQAQAEIELYRGIVAIYKALGGGWQ 462
           A FL  L A R         A A  ++    + ++ ALGGGW+
Sbjct: 426 ASFLADLQATRTYTDVRAQLAAANTQVAMSQIDLFLALGGGWE 468