Pairwise Alignments

Query, 300 a.a., transcriptional regulator, LysR family from Pseudomonas syringae pv. syringae B728a

Subject, 297 a.a., HTH-type transcriptional regulator PgrR from Pseudomonas sp. DMC3

 Score =  183 bits (465), Expect = 4e-51
 Identities = 106/296 (35%), Positives = 170/296 (57%), Gaps = 5/296 (1%)

Query: 4   IDSFQGVITFVVAARSNSFTEAAGRLGISKSAVGKSIARLEARLGVQLFHRSTRRISLTA 63
           +D F  +  F     + SFT+AA  L +SK+ V + + +LEARL V+L +R+TR++++TA
Sbjct: 1   MDRFDAMQAFARVVEAGSFTKAAETLHMSKTTVTQLVQQLEARLRVKLLNRTTRKVNVTA 60

Query: 64  DGDAYFIACSNALEEIGAAESGLAPGTREPSGRLRIDIPVAFGRRVVAPLLFEIANKYPA 123
           DG AY+      L ++  AE+ L      P GRLRID+P  F R ++ P L +   +YP 
Sbjct: 61  DGAAYYERVIKLLADMDDAETSLPGAAARPRGRLRIDVPSPFARHILVPALPDFHARYPD 120

Query: 124 LQLNMTFSDHLVDPIEEGIDLLVRFGELKDTSGLVARRLARQRWAICAAPSYLARFGVPD 183
           +Q++M  SD +VD I+E +D +VR GEL D S L+AR+LA     + AAP+YLAR G P+
Sbjct: 121 IQIDMGVSDRIVDIIDENVDCVVRGGELLDQS-LMARKLADLPLGVFAAPAYLAREGTPE 179

Query: 184 -TLEDLNRHHCIVGH---RRGQPLSWRVNEDQETVRYAPPSAHQIGDGEAMILAAVAGVG 239
             LE  + HH +V     R G+PL + ++   E ++        + DG A + A +AG+G
Sbjct: 180 HPLELQDSHHRVVAFLWARTGKPLPYTLHNGSERLQIKGQHVLAVDDGNAYLAAGLAGMG 239

Query: 240 LCQMPRCLFKDDIDAGRLVEVLAGYEPEPVEVHAVWPRVSHLRPKVRYVVDELVRL 295
           +  +P  +    + +G LV +  G+  E + ++  +P   H+  K+R  +D +V L
Sbjct: 240 VLWLPTYMADAHVASGELVPLFEGWRLESMPLYVAYPPNRHVSVKLRVFIDWIVAL 295