Pairwise Alignments

Query, 336 a.a., monosaccharide ABC transporter substrate-binding protein, CUT2 family from Pseudomonas syringae pv. syringae B728a

Subject, 309 a.a., ABC transporter, substrate binding protein (ribose) from Agrobacterium fabrum C58

 Score =  117 bits (293), Expect = 4e-31
 Identities = 89/290 (30%), Positives = 144/290 (49%), Gaps = 10/290 (3%)

Query: 1   MKFGTSLAAVAAFSLLASSISMAADGKTYKIGAAVYGLKGQFMQNWVRELKEHPAVKDGT 60
           MKF   L   AA  LLA S+  A   +  KIG AV  L+  F  N +++  E  A   G 
Sbjct: 1   MKFSRILLTSAA--LLALSLGSANAAEVKKIGLAVANLQANFF-NQIKQAVEAEAKTRGI 57

Query: 61  VKITVFDGNYDALTQNNQIETMITQHYDAIIFVPIDTKAGVGTVARAMENDIPVIASNTR 120
             +TV D   D  TQ NQI+ ++TQ+ DA+I++P    A    V  A    +PVI  +  
Sbjct: 58  AVVTV-DAKGDGPTQVNQIQDLLTQNIDALIYIPAGAAAATVPVKLAKAAGVPVINIDRN 116

Query: 121 VAGNK-VPYVGNDDVEGGRLQAQAMVDKLKGKGNVVIIQGPIGQSAQIDREKGELEVLSK 179
             G     ++  D V   +     ++ +  G G +VII G  G + ++DR KG +E +  
Sbjct: 117 ADGAPGDTFLATDSVASAKSVCDYIIKQAGGAGKMVIIHGQKGTTPEVDRTKGCMESVKA 176

Query: 180 HPDIKIIEKKTAN-WSRAEAQTLTEDWLNAHQNGGISGIISQNDDMALGALQAVKSRNLK 238
           +  +KI+ ++ +N WS+ E   + ++ L A  N  +S + +Q D +ALGA QA+K  N  
Sbjct: 177 NSGVKIVAEQWSNMWSQDEGFQIMQNMLQA--NPDVSIVFAQADGLALGAAQAIKVAN-P 233

Query: 239 PADVPITSIDGMPDAIQAAKKNEI-TTFLQDAQAQSQGALDVALRTLAGK 287
              + +   DG   A++A K      T  Q  Q   + A+++A++ + G+
Sbjct: 234 SQKIVVGGFDGDTAALEALKNGVFDVTATQQTQKMGRMAVEMAVKIVGGE 283