Pairwise Alignments

Query, 797 a.a., UvrD/REP helicase from Pseudomonas syringae pv. syringae B728a

Subject, 720 a.a., DNA helicase II from Serratia liquefaciens MT49

 Score = 62.8 bits (151), Expect = 7e-14
 Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 23/175 (13%)

Query: 492 NLKHVSDPMLRPLAHLMIDEFQDVSPQIVSWLRASLREIRRRGPALHTGRIAQHSSLLCV 551
           N  H+ +       ++++DEFQD +    +W+R                    +S+++ V
Sbjct: 202 NKPHILNHYRERFTNVLVDEFQDTNSIQYAWIRLLA---------------GNNSNVMIV 246

Query: 552 GDDWQSIYGWRGSSPKYFMEFAKEFSSPATTRVMLSDNFRSHQHIIDAAEHIVRAAPAIP 611
           GDD QSIYGWRG+  +    F K+F  P    V+L  N+RS  +I+ AA  ++       
Sbjct: 247 GDDDQSIYGWRGAQVENIQRFLKDF--PGAQSVLLEQNYRSTSNILKAANTLIANNGGRM 304

Query: 612 GKKARASGLLQELLPVKVLDRDEDE---LAERVAEHYHDGDSI---LLLYRKGSE 660
           GK     G   E + +     + DE   +  R+     +G ++    +LYR  ++
Sbjct: 305 GKNLWTEGGDGEPISIYCAFNELDESRFVVGRIKTWQENGGALNDCAILYRSNAQ 359



 Score = 30.0 bits (66), Expect = 5e-04
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 117 VIAGAGAGKSTSLVLRILLLHHYLGFELNAMTVVTFTRESRKDFISKLIDVMALWGHALE 176
           V+AGAG+GK+  LV RI  L         ++  VTFT ++  +   ++        H + 
Sbjct: 27  VLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRI-------EHLIG 79

Query: 177 QKQAREVVRTFHSRILPLVRS 197
             Q    + TFH     L+R+
Sbjct: 80  TSQGGMWIGTFHGLAHRLLRA 100



 Score = 27.3 bits (59), Expect = 0.003
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 16/84 (19%)

Query: 670 ALIDADSANGAQNRRIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGDTN 729
           AL   +    A    ++ +T HS+KGL+   VF++G    +    + +Q+    G     
Sbjct: 539 ALEAGEGQADAYQDAVQLMTLHSAKGLEFPLVFIVG----MEEGMFPSQMSLDEG----- 589

Query: 730 DLQPFDTAQKDEVLRLAYVAITRS 753
                   + +E  RLAYV +TR+
Sbjct: 590 -------GRLEEERRLAYVGLTRA 606