Pairwise Alignments

Query, 487 a.a., RND efflux system, outer membrane lipoprotein, NodT from Pseudomonas syringae pv. syringae B728a

Subject, 488 a.a., efflux transporter outer membrane subunit from Pseudomonas sp. SVBP6

 Score =  244 bits (624), Expect = 4e-69
 Identities = 157/486 (32%), Positives = 251/486 (51%), Gaps = 21/486 (4%)

Query: 4   RLAFTSRPTGLIRPFALGLCVVLLSACAVGPDYQKPSMAAPAQFKAAQGWRTAT-PSDGM 62
           RLA+T+ P        LG   + LSAC VGPD++ P   AP+ + A Q     + P    
Sbjct: 2   RLAYTASP------LVLG-ATLTLSACTVGPDFEAPKSTAPSAWPALQEKPAPSQPQSAP 54

Query: 63  GKGAWWEVYKDPQLNALVERLNTSNQTVAQYDAQYRQAQTLVRSSRAAFLPTLDLTTG-- 120
            +  WWE + D QL+AL++R    N  +    ++  Q++ +  S  +   P +DL  G  
Sbjct: 55  LEARWWETFDDRQLSALIQRAVERNLDLQIATSRLMQSRAVRMSIASDKYPAVDLDGGYS 114

Query: 121 KTRSGQGTGTSNSGTSASGIRNSYNAQLGVSWEADVWGKLRRGLEADTANAQASLADLAA 180
           +TR+        SG       N +      SWE D+WG++RR +EA  A+ + +  D   
Sbjct: 115 RTRNSAEGLADPSGKGGKSAFNLWQGDFTASWELDLWGRVRREVEAADASVEVAENDRQG 174

Query: 181 MRLSLQSELVQNYLQLRVIDEQKRLLESTVDAYQRSLTLTQNQYRAGISGSDAVAQAQTQ 240
           + LSL +E  ++Y+QLR +     ++   +D  + SL L+Q +   G++ +  VAQA  Q
Sbjct: 175 VLLSLLAETARDYIQLRAVQNTLAVVRENLDVSRHSLRLSQMRLSDGVATNLDVAQAAAQ 234

Query: 241 LKSTQADLIDLAWQRAQFENAIAVLMGMAPADFNLPASTSIPQLPQ----IPPGLPSQLL 296
           + S +A L  L  ++AQ  NA+++L+   P        T + +LP+       G+PS+L 
Sbjct: 235 VASIEARLPTLEERQAQLINALSLLVAEPPRSLQNELLTPV-ELPRTVQRFAMGVPSELA 293

Query: 297 ERRPDIAAAERSVMGANANIGVARAAYYPDFTLSMSGGYSS---STFANWISLPNRFWSV 353
           ERRPDI  A+  +  A A+IGVA+A +YP   LS S G+ S   S F NW S   R +++
Sbjct: 294 ERRPDIRQAQAQLHAATASIGVAKANFYPSIRLSGSAGFQSLQLSDFGNWSS---RRFAI 350

Query: 354 GPQLALTLFDGGRRSAEVDRTEAVYDQTVAQYRQTVLNGFQEVENYLVQLKVYEQEAAVR 413
           GPQL+L +F+GGR    +   EA   +   QY+Q VL  + E+++ L      +    + 
Sbjct: 351 GPQLSLPIFEGGRLKGVLKLREAQQQEAALQYQQVVLRAWHEIDDVLRLYNASQLRRDLL 410

Query: 414 QEALVSARDSLRLTNNQYKAGLIGYLDVVNVQATALSNERSVLSVLQSRLIASVQLIAAL 473
            EA+  +R +L     QY  G + +L+V+ VQ T L+N+   +    +  +A V L  +L
Sbjct: 411 DEAVRQSRVALETAQRQYVEGAVDFLNVLTVQGTLLANQEQWVESSAATSLAMVGLYKSL 470

Query: 474 GGGWDA 479
           GGGW +
Sbjct: 471 GGGWQS 476