Pairwise Alignments
Query, 913 a.a., YD repeat protein from Pseudomonas syringae pv. syringae B728a
Subject, 1464 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417
Score = 159 bits (402), Expect = 1e-42
Identities = 196/780 (25%), Positives = 316/780 (40%), Gaps = 129/780 (16%)
Query: 48 NDVTQYAYDAQGNLTTVTNALGQVYALASFDSYGNPQSITDPNGVMTTLSYTPQGWLASL 107
N Y YD +GN T+ +G + +DS+G+P I D G L ++P G L
Sbjct: 662 NHSWHYQYDQRGNCIAATDPMGHITRYR-YDSHGHPVEIIDATGKSKKLRWSPFGQLVE- 719
Query: 108 TIDSS--TTQYAYNEVGDLLQVTTADGNWVKYSYDDARRLIGVRNRLGESINYT------ 159
ID S +T++ Y+E G L +T A G ++S+D RLI + G + YT
Sbjct: 720 HIDCSGYSTRFGYDERGFLQFITDALGERTQFSHDARGRLISSQLPDGRTEQYTRDTSGL 779
Query: 160 ----LDPMGNRT----------AERTKDANGAVVHLQRRVFDELGRLIRVVGAGDQTQRY 205
DP G+ T +RT DA G V +D GRL ++ +++ ++
Sbjct: 780 LLGYTDPAGHTTLYQHNRRGQVCQRT-DAYGRRVKF---AYDSYGRLKALINENEESYQF 835
Query: 206 GYDLNDNQSSDTTPRNNKTQQAFDALNRVSKIVDPLQGVTALGYNSDDKVTKVVD-PRGV 264
+D D + + + +D LN ++ +TA+ + D+ + + P +
Sbjct: 836 VWDAGDRLTEQRDLDGSAKRYTYDLLNHMT-------AMTAVPAHFDNTLVNAAETPSPI 888
Query: 265 TTLYTYDSLGNRISSKSPDGGTSTYAYDEANNL--IRSTDARG--VVTEYAYDALNRLTS 320
D++G R+ +K D G + Y YD + L + TD G V +AY L RL +
Sbjct: 889 VHRMERDAVG-RLIAKMTDDGRTEYVYDSLDQLCAVTFTDLSGDTQVLSFAYAPLGRLLT 947
Query: 321 KSYPATPALNIKFLYDQTADGNLGIGHLTGLQDSAGVLTYTYDAKGNLVRQHRSVGVNSG 380
+ P G L + YD GNL + + G
Sbjct: 948 EQSPM------------------------------GTLQHHYDELGNLTQTQ----LPDG 973
Query: 381 DYYETLNYGYDAARNLVQIGYPSNINLTFTRNSAAQVTGVKLAIGNKTATLASNISYQPF 440
+ L YG + +L QI + F R+ + + L++ Y
Sbjct: 974 RWLNRLYYG---SGHLHQINLDGEVISDFERDRLHR------EVLRTQGQLSTRSEYDR- 1023
Query: 441 GPVNSLTWGNGILLSRTYDQDYQ--LTQQQVGNWQTTYRYDADSNISETATSLWGAVQYE 498
+G L SR +Q LT + Q + YD N++ Q +
Sbjct: 1024 ---------SGRLRSRHCRHSHQPMLTPAAM---QQHFEYDPADNLTGKLDQQPTTQQRQ 1071
Query: 499 ---YDALGRLTQEQTNSV--KKAYSFDATGNRTQRTTTNLTTSDATETQSLTYASDSNRV 553
YDA GR+T Q N + ++ +++DA N + + + +TY R
Sbjct: 1072 LLHYDATGRITASQDNLLGQRETFTYDAAANLLD--SPHPGAGLVVHNKLMTYQDKRYRY 1129
Query: 554 TSINGSTLPVDAAGNHTQINGRRFTYDSQGRLSEVYQANIYKIADYKYNALGQRIIKRAY 613
G + + Q RF YD++ RL EV N + Y+ LG+RI K +
Sbjct: 1130 DGF-GRMIEKRSTSRGVQ----RFAYDAESRLIEVRNEN-GNVVKMHYDPLGRRIKKTEH 1183
Query: 614 VMGSQALAGTTTYLYDPSGKLIGQTLYDGNGQKTSGQYWFWLDNM-PLAQLTANFSTLGE 672
+ L+ T + +D G L + + Y + + PLA++ +G+
Sbjct: 1184 GIDGYPLS-ETRFSWD------GLRLLQEHKYSQTSLYVYENEGYEPLARVDG----IGQ 1232
Query: 673 VSSSKLIYLHVDHLNTPRLATDSSQALLWRWNSDAYGVGSPEEDVDGDGKATTIALRFPG 732
+ KL Y H D P +++ ++W+ +G + E+V LRF G
Sbjct: 1233 LQ--KLRYYHNDLNGLPAQLSEADGHIVWQATYRVWG--NTLEEVREPHYIEEQNLRFQG 1288
Query: 733 QIYDAQTQLSYNYYRDYNPDTGRYVQSDPIGLGGGLNTYAYVNANPMSFIDPMGLAATAL 792
Q D +T L YN +R Y+PD GR+ DPI L GGLN Y Y NP S++DP+GL L
Sbjct: 1289 QYLDRETGLHYNTFRFYDPDIGRFTSPDPISLMGGLNLYLY-GFNPFSWVDPLGLEGIEL 1347
Score = 80.5 bits (197), Expect = 7e-19
Identities = 118/531 (22%), Positives = 199/531 (37%), Gaps = 74/531 (13%)
Query: 35 GQVASIDGARTDVND--VTQYAYDAQGNLTTVTNALGQVYALASFDSYGNPQSITDPNGV 92
G V+ I+ D + Y+Y+A G+LT V +A GQ+ S+D+ P G+
Sbjct: 473 GHVSKIERVYPDQRREVLVSYSYNATGDLTEVRDATGQIQRRFSYDAGRRMVEHQLPAGL 532
Query: 93 MTTLSYT---PQGWLAS--LTIDSSTTQYAYNEVGDLLQVTTADG-------NW------ 134
+ W S T + + Y+ + ++T DG +W
Sbjct: 533 RCFYEWALVEDVEWRVSHHWTDEGDAYHFEYDLSAGVTRIT--DGMQRISIRHWNNQHQI 590
Query: 135 VKYS----------YDDARRLIGVRNRLGESINYTLDPMGNRTAERTKDANGAVVHLQRR 184
KYS ++D R+L+G + G Y+ D GN +E
Sbjct: 591 TKYSDNLGQTWLFDWNDERQLLGATDPQGGRFEYSYDETGNLISE--------------- 635
Query: 185 VFDELGRLIRVVGAGDQTQRYGYDLNDNQSSDTTPRNNKTQQAFDALNRVSKIVDPLQGV 244
D LGR + + + L +T P N+ +D DP+ +
Sbjct: 636 -IDPLGRRDSTM----WLEHWALPL-----VETNPANHSWHYQYDQRGNCIAATDPMGHI 685
Query: 245 TALGYNSDDKVTKVVDPRGVTTLYTYDSLGNRISSKSPDGGTSTYAYDEANNLIRSTDAR 304
T Y+S +++D G + + G + G ++ + YDE L TDA
Sbjct: 686 TRYRYDSHGHPVEIIDATGKSKKLRWSPFGQLVEHIDCSGYSTRFGYDERGFLQFITDAL 745
Query: 305 GVVTEYAYDALNRLTSKSYPATPALNIKFLYDQTADGNLGIGHLTGLQDSAGVLT-YTYD 363
G T++++DA RL S P ++ D + G L G D AG T Y ++
Sbjct: 746 GERTQFSHDARGRLISSQLP--DGRTEQYTRDTS-------GLLLGYTDPAGHTTLYQHN 796
Query: 364 AKGNLVRQHRSVGVN---SGDYYETLNYGYDAARNLVQIGYPSNINLTFTRNSAAQVTGV 420
+G + ++ + G + D Y L + Q + + LT R+
Sbjct: 797 RRGQVCQRTDAYGRRVKFAYDSYGRLKALINENEESYQFVWDAGDRLTEQRDLDGSAKRY 856
Query: 421 KLAIGNKTATLASNISYQPFGPVNSLTWGNGILLSRTYDQDYQLTQQQVGNWQTTYRYDA 480
+ N + + ++ VN+ + I+ D +L + + +T Y YD+
Sbjct: 857 TYDLLNHMTAMTAVPAHFDNTLVNAAETPSPIVHRMERDAVGRLIAKMTDDGRTEYVYDS 916
Query: 481 -DSNISETATSLWGAVQ---YEYDALGRLTQEQTNSVKKAYSFDATGNRTQ 527
D + T T L G Q + Y LGRL EQ+ + +D GN TQ
Sbjct: 917 LDQLCAVTFTDLSGDTQVLSFAYAPLGRLLTEQSPMGTLQHHYDELGNLTQ 967
Score = 74.3 bits (181), Expect = 5e-17
Identities = 129/569 (22%), Positives = 222/569 (39%), Gaps = 84/569 (14%)
Query: 116 YAYNEVGDLLQVTTADGN-WVKYSYDDARRLIGVRNRLGESINY---TLDPMGNRTAERT 171
Y+YN GDL +V A G ++SYD RR++ + G Y ++ + R +
Sbjct: 493 YSYNATGDLTEVRDATGQIQRRFSYDAGRRMVEHQLPAGLRCFYEWALVEDVEWRVSHHW 552
Query: 172 KDANGAVVHLQ-------RRVFDELGRL-IRVVGAGDQTQRYG--------YDLNDNQS- 214
D G H + R+ D + R+ IR Q +Y +D ND +
Sbjct: 553 TD-EGDAYHFEYDLSAGVTRITDGMQRISIRHWNNQHQITKYSDNLGQTWLFDWNDERQL 611
Query: 215 -SDTTPRNNKTQQAFDALNRVSKIVDPLQGVTALGYNSDDKVTKV-VDPRGVTTLYTYDS 272
T P+ + + ++D + +DPL + + + V +P + Y YD
Sbjct: 612 LGATDPQGGRFEYSYDETGNLISEIDPLGRRDSTMWLEHWALPLVETNPANHSWHYQYDQ 671
Query: 273 LGNRISSKSPDGGTSTYAYDEANNLIRSTDARGVVTEYAYDALNRLTSKSYPATPALNIK 332
GN I++ P G + Y YD + + DA G + + +L + + +
Sbjct: 672 RGNCIAATDPMGHITRYRYDSHGHPVEIIDATGKSKKLRWSPFGQLV--EHIDCSGYSTR 729
Query: 333 FLYDQTADGNLGIGHLTGLQDSAGVLT-YTYDAKGNLVRQHRSVGVNSGDYYETLNYGYD 391
F YD+ G L + D+ G T +++DA+G L+ G T Y D
Sbjct: 730 FGYDER-------GFLQFITDALGERTQFSHDARGRLISSQLPDG-------RTEQYTRD 775
Query: 392 AARNLVQIGYPSNINLTFTRNSAAQVTGVKLAIGNKTATLASNISYQPFGPVNSLTWGNG 451
+ L+ P+ + N QV A G + +Y +G + +L N
Sbjct: 776 TSGLLLGYTDPAGHTTLYQHNRRGQVCQRTDAYGRRV-----KFAYDSYGRLKALINENE 830
Query: 452 ILLSRTYDQDYQLTQQQ-VGNWQTTYRYDADS-----------------NISETATSLWG 493
+D +LT+Q+ + Y YD + N +ET + +
Sbjct: 831 ESYQFVWDAGDRLTEQRDLDGSAKRYTYDLLNHMTAMTAVPAHFDNTLVNAAETPSPI-- 888
Query: 494 AVQYEYDALGRLTQEQTNSVKKAYSFDATGNRTQRTTTNLTTSDATETQSLTYASDSNRV 553
+ E DA+GRL + T+ + Y +D+ T T+L S T+ S YA +
Sbjct: 889 VHRMERDAVGRLIAKMTDDGRTEYVYDSLDQLCAVTFTDL--SGDTQVLSFAYAPLGRLL 946
Query: 554 TSING-STLP--VDAAGNHTQI---NGRRFT--YDSQGRLSEVYQANIYKIADYKYNALG 605
T + TL D GN TQ +GR Y G L ++ + I+D++ + L
Sbjct: 947 TEQSPMGTLQHHYDELGNLTQTQLPDGRWLNRLYYGSGHLHQI-NLDGEVISDFERDRLH 1005
Query: 606 QRIIKRAYVMGSQALAGTTTYLYDPSGKL 634
+ +++ + +T YD SG+L
Sbjct: 1006 REVLRTQGQL-------STRSEYDRSGRL 1027
Score = 38.5 bits (88), Expect = 3e-06
Identities = 72/359 (20%), Positives = 135/359 (37%), Gaps = 59/359 (16%)
Query: 312 YDALNRLTSKSYPATPALNIKFLYDQTADGNLGIGHLTGL------QDSAGVLTYTYDAK 365
YDA RL + + + ++ + DQ GH++ + Q +++Y+Y+A
Sbjct: 448 YDAAGRLV-QLHDNLDLVQVELIRDQ--------GHVSKIERVYPDQRREVLVSYSYNAT 498
Query: 366 GNLVRQHRSVGVNSGDYYETLNYGYDAARNLVQIGYPSNINLTFTRNSAAQVTGVKLAIG 425
G+L + G + YDA R +V+ P+ + + A V V+ +
Sbjct: 499 GDLTEVRDATGQIQR------RFSYDAGRRMVEHQLPAGLRCFY---EWALVEDVEWRVS 549
Query: 426 NKTATL--ASNISYQPFGPVNSLTWGNGILLSRTYDQDYQLTQQQVGNWQT-TYRYDADS 482
+ A + Y V +T G + R ++ +Q+T+ QT + ++ +
Sbjct: 550 HHWTDEGDAYHFEYDLSAGVTRITDGMQRISIRHWNNQHQITKYSDNLGQTWLFDWNDER 609
Query: 483 NISETATSLWGAVQYEYDALGRLTQEQTNSVKKAYSFDATGNRTQRTTTNLTTSDATETQ 542
+ G +Y YD G L E ++ D+T + T+ A +
Sbjct: 610 QLLGATDPQGGRFEYSYDETGNLISEIDPLGRR----DSTMWLEHWALPLVETNPANHSW 665
Query: 543 SLTYASDSNRVTSINGSTLPVDAAGNHTQINGRRFTYDSQGRLSEVYQANIYKIADYKYN 602
Y N + + D G+ T R+ YDS G E+ A K +++
Sbjct: 666 HYQYDQRGNCIAA-------TDPMGHIT-----RYRYDSHGHPVEIIDAT-GKSKKLRWS 712
Query: 603 ALGQRII--------------KRAYVMG-SQALAGTTTYLYDPSGKLIGQTLYDGNGQK 646
GQ + +R ++ + AL T + +D G+LI L DG ++
Sbjct: 713 PFGQLVEHIDCSGYSTRFGYDERGFLQFITDALGERTQFSHDARGRLISSQLPDGRTEQ 771