Pairwise Alignments
Query, 913 a.a., YD repeat protein from Pseudomonas syringae pv. syringae B728a
Subject, 1610 a.a., T6SS PAAR-repeat protein / RhaS protein from Pseudomonas sp. S08-1
Score = 216 bits (549), Expect = 1e-59
Identities = 231/814 (28%), Positives = 334/814 (41%), Gaps = 136/814 (16%)
Query: 52 QYAYDAQGNLTTVTNALGQVYALASFDSYGNPQSI-----TDPNGVMTTLSYTPQGWL-A 105
+Y +D +G++T V NA G S ++Y + Q+ DP+G T +Y +G L A
Sbjct: 729 RYVWDDKGSVTVV-NADG------SEETYVHDQNARLVRQVDPDGAETLRAYDDKGQLIA 781
Query: 106 SLTIDSSTTQYAYNEVGDLLQVTTADGNWVKYSYDDA-----RRLIGV----RNRLGESI 156
+ + T+Y Y+E G L A+G V YSY D RR + RN G+ I
Sbjct: 782 EQSPLGAITEYRYDEAGRLETRIPAEGEAVHYSYFDGQVRSVRRGMATWKYERNAQGD-I 840
Query: 157 NYTLDPMGNRTAERTKDANGAVVHLQRR-------VFDELGRLIRVVGAGDQTQRYGYDL 209
+DP+G T R DA G ++ ++ V++ G LI G T+RY YD
Sbjct: 841 TEQIDPLGQSTHYRY-DARGRLLEIRHPDGSQHLLVWNAQGELIEEQLPGAGTRRYRYDA 899
Query: 210 NDNQSSDTTPRNNKTQQAFDALNRVSKIVDPLQGVTALGYNSDDKVTKVVDPRGVTTLYT 269
Q + TQ +DA NR++++ P G A YN+ KVT D +G T Y
Sbjct: 900 FGRQITRQDEHGALTQYQWDAANRLTQVTLPGGGSRAYSYNAYGKVTSERDEQGRITRYE 959
Query: 270 YDSLGNRISSK-SPDGGTSTYAYDEANNLI----------------------RSTDARGV 306
Y + +S + +PDG Y YD A L+ + T G
Sbjct: 960 YADGLHLVSRRINPDGSQLRYRYDNARLLLTDIENERGEHYRLDYHPNGLISQETGFDGR 1019
Query: 307 VTEYAYDALNRLTSKSYPATPALNIKFLYDQTADGNL----------------GIGHLTG 350
T Y YD L K A Y + + G L G+G L
Sbjct: 1020 KTAYRYDLAGHLIEKKEFAEDGSERITAYQRDSAGRLLVKTLPDGEQIHYAYDGLGRLVS 1079
Query: 351 LQDSAGVLTYTYDAKGNLVRQHRSVGVNSGDYYETLNYGYDAARNLVQIGYPSNINLTFT 410
+ D L Y+YD + L+ +H+ + TL Y YDA L P L +
Sbjct: 1080 VDDGQWPLAYSYDLRDRLIEEHQG--------WATLRYEYDALGQLGHCRLPDGSRLDYR 1131
Query: 411 RNSAAQVTGVKLAIGNKTATLASNISYQPFGPVNSLTWGNGILLSR-TYDQDYQLTQQQV 469
++ G+ L ++ F G LLS YD +L +V
Sbjct: 1132 YRPGGELEGIDLN--------GQPLTRHQFERGRERYRRQGALLSEYDYDDQGRLQAHRV 1183
Query: 470 GN-----WQTTYRYDADSNISETATSLWGAVQYEYDALGRLTQEQTNSVKKAYSFDATGN 524
+ Q YRYD N+S S G + YD L RL + + ++++ D G
Sbjct: 1184 RSDHRQLLQRQYRYDDSGNLSAIEDSRKGNRSFHYDPLDRLVAVR-GDLPESFAHDPAGT 1242
Query: 525 RTQRTTTNLTTSDATETQSLTYASDSNRVTSINGSTLPVDAAGNHTQIN---GRR----F 577
L + + L NR+ S DA GN + G+R +
Sbjct: 1243 --------LLAQNGAAPEGLANVK-GNRLLMQGDSHYDYDAFGNLVRERRGAGQRLVTEY 1293
Query: 578 TYDSQGRLSEVYQANIYKIADYKYNALGQRIIKRAYVMGSQALAGTTTYLYDPSGKLIGQ 637
YDSQ RL + ++ Y+Y+A G+RI K V G TT +L+ G+
Sbjct: 1294 RYDSQHRLIAASLPDGRQV-QYRYDAFGRRIAKT--VDGQ-----TTEFLWQ------GE 1339
Query: 638 TLYDGNGQKTSGQYWFWLDNM-PLAQLTANFSTLGEVSSSKLIYLHVDHLNTPRLATDSS 696
L +G Y + PLA L GE +++ Y +DHL TP+ T +
Sbjct: 1340 RLIAESGPAHYRSYVYEPGTFRPLALLQ------GESEATEPFYYQLDHLGTPQELTSTG 1393
Query: 697 QALLWRWNSDAYGVGSPEEDVDGDGKATTIALRFPGQIYDAQTQLSYNYYRDYNPDTGRY 756
+LW AYG + E + D LRF GQ +DA+T L YN +R YNP TG +
Sbjct: 1394 GQILWSVKYRAYGSLAKIEVAEVDNP-----LRFQGQYFDAETGLHYNRHRYYNPGTGSF 1448
Query: 757 VQSDPIGLGGGLNTYAYVNANPMSFIDPMGLAAT 790
+ DPI L GGLN Y YV NP ++DP+GL T
Sbjct: 1449 LTPDPIKLAGGLNNYQYV-PNPTGWVDPLGLHTT 1481
Score = 93.2 bits (230), Expect = 1e-22
Identities = 154/632 (24%), Positives = 241/632 (38%), Gaps = 117/632 (18%)
Query: 56 DAQGN-LTTVTNALGQVYALASFDSYGNPQSITDPNGVMTTLSYTPQGWLASLTIDSSTT 114
DA+G L +++A G L S D G PQ ++ G L Y +A +D
Sbjct: 590 DARGGYLIAISDAYGNRLGL-SRDLVGRPQRLSGA-GRALLLRYKGSHIVA---VDYQIQ 644
Query: 115 QYAYNEVGDLLQVTTADGNWVKYSYDDARRLIGVRNRLGESINYTLDPMGNRTAERTKDA 174
+ A NE V T V+Y Y++ +LI N LGE+ +Y D N ER A
Sbjct: 645 RPAENEEASWQSVQTL----VRYQYNERDQLIAASNALGETEHYRYD-QDNVILERQL-A 698
Query: 175 NGAVVHLQRRVFDELGRLIRV-VGAGDQTQRYGYDLNDNQSSDTTPRNNKTQQAFDALNR 233
GA + + + + R + G RY +D ++ S T + +++ +
Sbjct: 699 GGAAFYWEWQGQGKQARCVHHWANFGQMDARYVWD---DKGSVTVVNADGSEETYV---- 751
Query: 234 VSKIVDPLQGVTALGYNSDDKVTKVVDPRGVTTLYTYDSLGNRISSKSPDGGTSTYAYDE 293
++ + ++ + VDP G TL YD G I+ +SP G + Y YDE
Sbjct: 752 ---------------HDQNARLVRQVDPDGAETLRAYDDKGQLIAEQSPLGAITEYRYDE 796
Query: 294 ANNLIRSTDARGVVTEYAY-DALNRLTSKSYPATPALNIKFLYDQTADGNLGIGHLTGLQ 352
A L A G Y+Y D R + + Y++ A G+ +T
Sbjct: 797 AGRLETRIPAEGEAVHYSYFDGQVRSVRRGMAT-------WKYERNAQGD-----ITEQI 844
Query: 353 DSAGVLT-YTYDAKGNLVR-------QHRSVGVNSGDYYE-------TLNYGYDAARNLV 397
D G T Y YDA+G L+ QH V G+ E T Y YDA +
Sbjct: 845 DPLGQSTHYRYDARGRLLEIRHPDGSQHLLVWNAQGELIEEQLPGAGTRRYRYDAFGRQI 904
Query: 398 QIGYPSNINLTFTRNSAAQVTGVKLAIGNKTATLASNISYQPFGPVNSLTWGNGILLSRT 457
+ ++A ++T V L G A SY +G V S G +
Sbjct: 905 TRQDEHGALTQYQWDAANRLTQVTLPGGGSRA-----YSYNAYGKVTSERDEQGRITRYE 959
Query: 458 YDQDYQLTQQQVG--NWQTTYRYD-ADSNISETATSLWGAVQYEYDALGRLTQEQ-TNSV 513
Y L +++ Q YRYD A +++ + +Y G ++QE +
Sbjct: 960 YADGLHLVSRRINPDGSQLRYRYDNARLLLTDIENERGEHYRLDYHPNGLISQETGFDGR 1019
Query: 514 KKAYSFDATGNRTQR-----------------TTTNLTTSDATETQSLTYASDS-NRVTS 555
K AY +D G+ ++ + L + + + YA D R+ S
Sbjct: 1020 KTAYRYDLAGHLIEKKEFAEDGSERITAYQRDSAGRLLVKTLPDGEQIHYAYDGLGRLVS 1079
Query: 556 INGSTLPVDAAGNHTQINGRRFTYDSQGRLSEVYQANIYKIADYKYNALGQRIIKRAYVM 615
++ P+ ++YD + RL E +Q + Y+Y+ALGQ +
Sbjct: 1080 VDDGQWPL------------AYSYDLRDRLIEEHQG--WATLRYEYDALGQ--------L 1117
Query: 616 GSQAL--AGTTTYLYDPSGKLIGQTLYDGNGQ 645
G L Y Y P G+L G D NGQ
Sbjct: 1118 GHCRLPDGSRLDYRYRPGGELEG---IDLNGQ 1146
Score = 80.9 bits (198), Expect = 6e-19
Identities = 127/495 (25%), Positives = 185/495 (37%), Gaps = 77/495 (15%)
Query: 24 AGTISRTYTALGQVASIDGARTDVNDVTQYAYDAQGNLTTVTNALGQVYALASFDSYGNP 83
AGT Y A G+ + + + +TQY +DA LT VT G A S+++YG
Sbjct: 890 AGTRRYRYDAFGRQIT---RQDEHGALTQYQWDAANRLTQVTLPGGGSRAY-SYNAYGKV 945
Query: 84 QSITDPNGVMTTLSYTPQGWLASLTIDSSTTQYAYNEVGDLLQVTTADGNWVKYSYDDAR 143
S D G +T Y L S I+ DG+ ++Y YD+AR
Sbjct: 946 TSERDEQGRITRYEYADGLHLVSRRIN-------------------PDGSQLRYRYDNAR 986
Query: 144 RLI-GVRNRLGESINYTLDPMGNRTAERTKDANGAVVHLQRRVFDELGRLI-RVVGAGDQ 201
L+ + N GE P G + E D +D G LI + A D
Sbjct: 987 LLLTDIENERGEHYRLDYHPNGLISQETGFDGRKTAYR-----YDLAGHLIEKKEFAEDG 1041
Query: 202 TQR---YGYDLNDNQSSDTTPRNNKTQQAFDALNRVSKIVDPLQGVTALGYNSDDKVTKV 258
++R Y D T P + A+D L R+ + D G L Y+ D + +
Sbjct: 1042 SERITAYQRDSAGRLLVKTLPDGEQIHYAYDGLGRLVSVDD---GQWPLAYSYDLRDRLI 1098
Query: 259 VDPRGVTTL-YTYDSLGNRISSKSPDGGTSTYAYDEANNLIRSTDARG-VVTEYAYDALN 316
+ +G TL Y YD+LG + PDG Y Y L D G +T + ++
Sbjct: 1099 EEHQGWATLRYEYDALGQLGHCRLPDGSRLDYRYRPGGEL-EGIDLNGQPLTRHQFER-- 1155
Query: 317 RLTSKSYPATPALNIKFLYDQTADGNLGIGHLTGLQDSAGVLTYTYDAKGNLVRQHRSVG 376
+ Y AL ++ YD G L + Y YD GNL S
Sbjct: 1156 --GRERYRRQGALLSEYDYDD--QGRLQAHRVRSDHRQLLQRQYRYDDSGNLSAIEDSRK 1211
Query: 377 VNSGDYYETLNYGYDAARNLVQIGYPSNINLTFTRNSAAQVTGVKLAIGNKTATLASNIS 436
N +Y+ L+ LV + ++ +F + A TL +
Sbjct: 1212 GNRSFHYDPLD-------RLVAV--RGDLPESFAHDPA--------------GTLLAQNG 1248
Query: 437 YQPFGPVNSLTWGNGILLSRTYDQDY----QLTQQQVGNWQ---TTYRYDADSNISETAT 489
P G N GN +L+ DY L +++ G Q T YRYD+ + +
Sbjct: 1249 AAPEGLAN--VKGNRLLMQGDSHYDYDAFGNLVRERRGAGQRLVTEYRYDSQHRLIAASL 1306
Query: 490 SLWGAVQYEYDALGR 504
VQY YDA GR
Sbjct: 1307 PDGRQVQYRYDAFGR 1321
Score = 38.5 bits (88), Expect = 3e-06
Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 9/175 (5%)
Query: 24 AGTI-SRTYTALGQVASIDGARTDVNDVTQYAYDAQGNLTTVTNALGQ-VYALASFDSYG 81
AGT+ ++ A +A++ G R + + Y YDA GNL GQ + +DS
Sbjct: 1240 AGTLLAQNGAAPEGLANVKGNRLLMQGDSHYDYDAFGNLVRERRGAGQRLVTEYRYDSQH 1299
Query: 82 NPQSITDPNGVMTTLSYTPQGWLASLTIDSSTTQYAYNEVGDLLQVTTADGNWVKYSYDD 141
+ + P+G Y G + T+D TT++ + G+ L + ++ Y Y+
Sbjct: 1300 RLIAASLPDGRQVQYRYDAFGRRIAKTVDGQTTEFLWQ--GERLIAESGPAHYRSYVYEP 1357
Query: 142 AR----RLIGVRNRLGESINYTLDPMGNRTAERTKDANGAVVHLQRRVFDELGRL 192
L+ + E Y LD +G E T + ++ R + L ++
Sbjct: 1358 GTFRPLALLQGESEATEPFYYQLDHLGT-PQELTSTGGQILWSVKYRAYGSLAKI 1411