Pairwise Alignments

Query, 537 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  219 bits (559), Expect = 2e-61
 Identities = 173/549 (31%), Positives = 277/549 (50%), Gaps = 29/549 (5%)

Query: 1   MSIKLRLFLLIGTSVLTVMIISL--VNYLGNTR-----MEAAMLDSEVSMAALGNHLEAD 53
           ++I  R FL      L V+++ +  VN +   R     M A  L S  S+  +  ++   
Sbjct: 6   LNIAPRAFLGFAFIALLVILLGVFAVNRMAQIRQSSVEMTATQLPSVTSLGVITENV--- 62

Query: 54  MMHDALRADVLSAMLFGLGRSNSTRDEVQTSLKEHAALFRKVVSDNLQLPLTDAIKAELS 113
                LR  +LS  +  + R  ++  E +T +       +   +    LP      A   
Sbjct: 63  -----LRLRILSFRVL-VNREPASLQEAETRIGVLVDKVKTAQASYAALPAGPEEAALYK 116

Query: 114 RIKPSLDAYISAGERIVGLAIDSPDRAQQEL--GTFSSAFTQLEGQMSTLSDLIEDNSKA 171
               +LD Y+ A   ++ L+        + L          Q+  Q++ L  +   ++K 
Sbjct: 117 TFMVTLDNYLKAQADMLALSKQGKVDEMRALINSRIKDGTDQMGEQLNKLIAINVADAKT 176

Query: 172 SGERTRQTTRSANLTLAVVLSISILLLLVQGHWV-TRSIMIPLASASRIADSIAHGNLSE 230
           +     Q+   A +T  + +S++  LL V   W+ TRSI+ PL  A  +A++IA GNLS+
Sbjct: 177 ADTDAGQSYDGA-ITGVIAVSVAAALLTVLLAWLLTRSIVTPLRKAVEVAETIAGGNLSK 235

Query: 231 PIAESRGRDEASMLIRSLAIMQRDLRSMIEVVRSNANDVSGMSRQLSSGCHEVADSSRQQ 290
            I E  G+DE + L+ +LA MQ +LR  I+ +  +A  ++  + +LS+   E +   +QQ
Sbjct: 236 AI-EDDGKDEPARLLGALATMQANLRQTIQHIAGSATQLASAAEELSAVTEEASKGLQQQ 294

Query: 291 SSAAGTMSAATSEMTASIEEITRHAGQALEMASQAESLAKNGGRVIHQVVSDMDSIARSA 350
           ++     + A +EMTA++EE+ R+A    E +SQ+   A+ G   + + V  + ++ +  
Sbjct: 295 NNEIDQAATAVNEMTAAVEEVARNAVSTSEASSQSNQAAREGRDRVVETVGAIQTMTQDV 354

Query: 351 QQSAQVIRTLDKDSEGIFNIIQVIKGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVR 410
           Q +A +I  L      I  ++ VI+ IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR
Sbjct: 355 QNTAAMIEGLATQGRDIGKVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVR 414

Query: 411 SLAGRTSASTQEITAMVARIQQSTREAVTSMEAGVAQVDKGMAVTAEVERAISDILAATL 470
           +LA RT+ STQEI  MVA IQ  T EAV SM+    Q ++    T E+ RA    L    
Sbjct: 415 ALAHRTAQSTQEIEKMVAGIQNGTGEAVQSMQ----QSNQRTQTTLEMARAAGVALEQIT 470

Query: 471 STTQLVND----ITRTIGEQSLASNEIAHQVEMIASMSEGNSRVIGQTASTTDELSVMAG 526
            +  L+N+    I     EQ+  S E+   +  I  ++  ++    QT++ + ELS +A 
Sbjct: 471 QSISLINERNLVIASASEEQAQVSREVDRNLVNIRDLATQSAAGANQTSAASHELSRLAV 530

Query: 527 QLSQSVDRF 535
            L+  V RF
Sbjct: 531 DLNGMVARF 539