Pairwise Alignments

Query, 319 a.a., monosaccharide ABC transporter substrate-binding protein, CUT2 family from Pseudomonas syringae pv. syringae B728a

Subject, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas simiae WCS417

 Score =  489 bits (1260), Expect = e-143
 Identities = 254/316 (80%), Positives = 286/316 (90%), Gaps = 1/316 (0%)

Query: 1   MKLPFAGRLLAVAMFAAVTAVMPLSAAYAQTPEKPKVALVMKSLANEFFLTMEDGAKAYQ 60
           MKLPFAGRLLAVA+ AA +A +PLS+A+A    KPKV LVMKSLANEFF+TM+DGAK YQ
Sbjct: 1   MKLPFAGRLLAVAVLAAASAALPLSSAFADDAAKPKVGLVMKSLANEFFVTMQDGAKTYQ 60

Query: 61  KEHATEFDLISNGIKDESDTSAQIRIVEQMIASNVNALVIAPADSKALVPVLKKATDAGI 120
           KEHA +FD+I+NGIK+E+DTSAQI IV QMI + VNA+VIAPADSKALV VLKKA+DAGI
Sbjct: 61  KEHAADFDMITNGIKNETDTSAQIDIVNQMILAKVNAIVIAPADSKALVTVLKKASDAGI 120

Query: 121 KVVNIDNQLDVDVLKSKNLQIPFVGPDNRKGAKLVGDYLAGKLTAGDEVGIIEGVSTTNN 180
           KVVNIDN+LD DVLKSKNL IPFVGPDNRKG+KLVGDYLA +L +GD+VGIIEGV TT N
Sbjct: 121 KVVNIDNRLDPDVLKSKNLDIPFVGPDNRKGSKLVGDYLAKQLASGDKVGIIEGVPTTTN 180

Query: 181 AQQRTAGFKDAMDEAKMKVVSTQSGNWEIDKGNAVASAMLNEYPNLKALLAGNDSMALGA 240
           AQQRTAG+KDAMD A MK+VSTQSGNWEID+G  VASAML+EYP+LKALLAGND+MALGA
Sbjct: 181 AQQRTAGYKDAMDAAGMKIVSTQSGNWEIDQGQKVASAMLSEYPDLKALLAGNDNMALGA 240

Query: 241 VSAVRAAGKAGKVMVVGYDNINAIKPMLKDGRVLATADQYAAKQAVFGIEAALKLVKGEK 300
           VSAVRAAGKAGKV+VVGYDNI AIKPML+DGRVLATADQ AA+QAVFGI+ ALKLVKGEK
Sbjct: 241 VSAVRAAGKAGKVLVVGYDNIEAIKPMLQDGRVLATADQAAAQQAVFGIQNALKLVKGEK 300

Query: 301 VDTNDKGVIETPVQLV 316
           VD+ D GVIETPV+LV
Sbjct: 301 VDSKD-GVIETPVELV 315